Co-expression analysis

Gene ID	Zm.11259.1.A1_at
Gene name	m19 protein
Homology with Arabidopsis	Similar to At4g18960: AG (AGAMOUS) (HF=1e-2)
Module size	6 genes
NF	0.68
%ile	89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.97	Zm.11259.1.A1_at	AI966828	m19 protein	-	1e-2	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.96	Zm.7341.1.A1_at	BM267652	TFIIB-related protein	-	2e-14	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.5990.2.A1_at	AI834730	-	-	8e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.7073.2.A1_at	AI600777	-	-	1e-2	At5g37260	RVE2 (REVEILLE 2)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.599.2.S1_a_at	AY111360.1	chromomethylase	-	2e+0	At3g30350	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.11269.1.A1_at	CK347607	EF hand family protein	-	6e+0	At2g22460	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.4750.1.S1_at, orthologous to the query gene, Zm.11259.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	97.8	PtpAffx.4750.1.S1_at	At4g18960	hypothetical protein	-	3e-40	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.37	62.3	Ptp.6714.2.S1_a_at	At4g18960	hypothetical protein	-	7e-5	At4g38495	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.35	59.7	PtpAffx.67064.1.S1_at	At4g18960	hypothetical protein	-	3e-15	At5g53930	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	PtpAffx.94786.1.A1_at	At4g18960	-	-	5e-26	At3g54610	GCN5	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.34	58.3	Ptp.3611.1.S1_at	At4g18960	hypothetical protein	-	5e-13	At1g19370	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.31	53.7	PtpAffx.105178.1.S1_at	At4g18960	-	-	2e-12	At3g01790	ribosomal protein L13 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.29	50.5	Ptp.2191.1.S1_at	At4g18960	hypothetical protein	-	8e-6	At1g04985	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.28	50.5	Ptp.400.2.A1_at	At4g18960	-	-	5e-7	At3g06110	MKP2 (MAPK PHOSPHATASE 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	PtpAffx.156393.1.S1_at	At4g18960	-	-	2e+0	At3g13630	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.26	45.2	Ptp.6270.1.S1_at	At4g18960	-	-	5e+0	At5g41160	ATPUP12	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	Ptp.8106.1.S1_at	At4g18960	hypothetical protein	-	1e+0	At1g34030	40S ribosomal protein S18 (RPS18B)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.25	43.6	PtpAffx.211178.1.S1_at	At4g18960	polycomb group protein	-	4e-55	At3g20740	FIE (FERTILIZATION-INDEPENDENT ENDOSPERM)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.24	41.8	PtpAffx.83865.1.S1_at	At4g18960	-	-	9e-21	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.5659.1.S1_at	At4g18960	high mobility group family	-	1e-25	At2g34450	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	Ptp.896.1.A1_at	At4g18960	hypothetical protein	-	7e-2	At2g44900	armadillo/beta-catenin repeat family protein / F-box family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.23	40.5	PtpAffx.5925.1.S1_at	At4g18960	hypothetical protein	-	1e-40	At4g30220	RUXF (SMALL NUCLEAR RIBONUCLEOPROTEIN F)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.5358.1.S1_at	At4g18960	hypothetical protein	-	1e-17	At4g29520	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	Ptp.1147.1.S1_at	At4g18960	hypothetical protein	-	2e-18	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.3496.1.S1_at	At4g18960	hypothetical protein	-	2e-5	At5g09880	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.7252.1.S1_at	At4g18960	hypothetical protein	-	2e-17	At3g07140	GPI transamidase component Gpi16 subunit family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.17	29.1	PtpAffx.16154.1.S1_at	At4g18960	hypothetical protein	-	5e-39	At1g01350	nucleic acid binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.53642.1.S1_at	At4g18960	hypothetical protein	-	1e+0	At5g28630	glycine-rich protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.124647.1.S1_at	At4g18960	hypothetical protein	-	7e-26	At2g20330	transducin family protein / WD-40 repeat family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.16	26.9	PtpAffx.16916.1.S1_at	At4g18960	hypothetical protein	-	2e+1	At5g22608	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	Ptp.7373.1.S1_s_at	At4g18960	hypothetical protein	-	3e-23	At1g63260	TET10 (TETRASPANIN10)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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