Co-expression analysis

Gene ID	Zm.11259.1.A1_at
Gene name	m19 protein
Homology with Arabidopsis	Similar to At4g18960: AG (AGAMOUS) (HF=1e-2)
Module size	6 genes
NF	0.68
%ile	89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.97	Zm.11259.1.A1_at	AI966828	m19 protein	-	1e-2	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.96	Zm.7341.1.A1_at	BM267652	TFIIB-related protein	-	2e-14	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.5990.2.A1_at	AI834730	-	-	8e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.7073.2.A1_at	AI600777	-	-	1e-2	At5g37260	RVE2 (REVEILLE 2)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.599.2.S1_a_at	AY111360.1	chromomethylase	-	2e+0	At3g30350	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.11269.1.A1_at	CK347607	EF hand family protein	-	6e+0	At2g22460	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the barley gene, Contig4516_at, orthologous to the query gene, Zm.11259.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.82	93.1	Contig4516_at	At4g18960	-	-	5e-11	At2g22540	SVP (SHORT VEGETATIVE PHASE)	O.I.	H.G.	S.X.	Please select
0.50	66.9	Contig17594_at	At4g18960	-	-	2e+0	At4g11300	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	63.2	Contig6137_at	At4g18960	-	-	3e-7	At2g34190	xanthine/uracil permease family protein	O.I.	H.G.	S.X.	Please select
0.45	59.3	Contig13143_s_at	At4g18960	-	-	5e+0	At5g38565	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig13743_at	At4g18960	-	-	1e+0	At3g61172	LCR8 (Low-molecular-weight cysteine-rich 8)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig16299_at	At4g18960	-	-	2e+0	At3g55960	NLI interacting factor (NIF) family protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	HVSMEc0015C10r2_at	At4g18960	-	-	1e-9	At5g06950	AHBP-1B	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig11693_at	At4g18960	-	-	4e-2	At2g46930	pectinacetylesterase, putative	O.I.	H.G.	S.X.	Please select
0.35	45.1	Contig11945_s_at	At4g18960	-	-	1e+0	At1g13450	DNA binding protein GT-1	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig6454_at	At4g18960	-	-	6e-1	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig11245_at	At4g18960	-	-	1e-1	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.	Please select
0.21	22.6	Contig300_at	At4g18960	-	-	1e-56	At2g34480	60S ribosomal protein L18A (RPL18aB)	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig13507_at	At4g18960	-	-	2e+0	At4g24370	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig6947_at	At4g18960	-	-	5e-14	At5g45620	26S proteasome regulatory subunit, putative (RPN9)	O.I.	H.G.	S.X.	Please select
0.09	7.4	Contig12184_at	At4g18960	-	-	5e-1	At1g58350	ZW18	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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