Co-expression analysis

Gene ID	Zm.11259.1.A1_at
Gene name	m19 protein
Homology with Arabidopsis	Similar to At4g18960: AG (AGAMOUS) (HF=1e-2)
Module size	6 genes
NF	0.68
%ile	89.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.97	Zm.11259.1.A1_at	AI966828	m19 protein	-	1e-2	At4g18960	AG (AGAMOUS)	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.96	Zm.7341.1.A1_at	BM267652	TFIIB-related protein	-	2e-14	At4g36650	ATPBRP (PLANT-SPECIFIC TFIIB-RELATED PROTEIN)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.5990.2.A1_at	AI834730	-	-	8e+0	At5g59510	RTFL5 (ROTUNDIFOLIA LIKE 5)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.7073.2.A1_at	AI600777	-	-	1e-2	At5g37260	RVE2 (REVEILLE 2)	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.599.2.S1_a_at	AY111360.1	chromomethylase	-	2e+0	At3g30350	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.11269.1.A1_at	CK347607	EF hand family protein	-	6e+0	At2g22460	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.1	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.57956.1.S1_at, orthologous to the query gene, Zm.11259.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	GmaAffx.57956.1.S1_at	At4g18960	-	-	1e-33	At5g60910	AGL8 (agamous-like 8)	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.51351.1.S1_at	At4g18960	-	-	7e-20	At5g53130	CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)	O.I.	H.G.	S.X.	Please select
0.42	59.3	GmaAffx.40271.1.S1_at	At4g18960	-	-	5e-19	At1g21450	SCL1 (SCARECROW-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.39	54.5	Gma.4041.1.S1_at	At4g18960	-	-	5e-3	At5g60910	AGL8 (agamous-like 8)	O.I.	H.G.	S.X.	Please select
0.33	46.1	GmaAffx.66428.1.S1_at	At4g18960	-	-	8e-1	At1g78430	-	O.I.	H.G.	S.X.	Please select
0.30	40.4	GmaAffx.58176.1.S1_at	At4g18960	-	-	3e-1	At2g39540	gibberellin-regulated family protein	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.53128.1.S1_at	At4g18960	-	-	4e-22	At1g63440	HMA5 (HEAVY METAL ATPASE 5)	O.I.	H.G.	S.X.	Please select
0.29	39.0	GmaAffx.80898.1.S1_at	At4g18960	-	-	3e+0	At3g04700	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.9541.1.S1_at	At4g18960	-	-	2e+0	At3g11230	yippee family protein	O.I.	H.G.	S.X.	Please select
0.27	35.7	Gma.11997.1.S1_at	At4g18960	-	-	5e-7	At1g61065	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.9	GmaAffx.24666.1.S1_at	At4g18960	-	-	2e-1	At2g39705	RTFL8 (ROTUNDIFOLIA LIKE 8)	O.I.	H.G.	S.X.	Please select
0.25	32.6	GmaAffx.17899.1.A1_at	At4g18960	-	-	3e-1	At4g10150	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.23	29.9	PsAffx.psHA006iH10r_s_at	At4g18960	-	-	1e+0	At2g28140	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.5813.1.S1_at	At4g18960	-	-	6e-3	At4g33660	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	28.1	Gma.13263.1.A1_at	At4g18960	-	-	5e-1	At2g25190	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	26.6	GmaAffx.83818.1.S1_at	At4g18960	-	-	9e-1	At3g09290	TAC1 (TELOMERASE ACTIVATOR1)	O.I.	H.G.	S.X.	Please select
0.20	25.1	GmaAffx.45299.1.S1_at	At4g18960	-	-	9e-35	At4g36980	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.18069.1.S1_at	At4g18960	WRKY54	-	4e-21	At2g47260	WRKY23	O.I.	H.G.	S.X.	Please select
0.20	25.1	Gma.11341.3.S1_s_at	At4g18960	-	-	8e-26	At4g17900	zinc-binding family protein	O.I.	H.G.	S.X.	Please select
0.19	23.7	GmaAffx.26356.1.S1_at	At4g18960	-	-	3e-77	At1g30270	CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)	O.I.	H.G.	S.X.	Please select
0.17	21.2	GmaAffx.91969.1.S1_s_at	At4g18960	-	-	3e-35	At1g30270	CIPK23 (CBL-INTERACTING PROTEIN KINASE 23)	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.65140.1.S1_at	At4g18960	-	-	7e-2	At4g33670	L-galactose dehydrogenase (L-GalDH)	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.24844.1.S1_at	At4g18960	-	-	3e+0	At5g02210	-	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.87777.1.S1_at	At4g18960	-	-	4e-19	At1g30110	ATNUDX25 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 25)	O.I.	H.G.	S.X.	Please select
0.16	19.7	GmaAffx.92143.1.S1_s_at	At4g18960	-	-	1e-13	At3g44190	pyridine nucleotide-disulphide oxidoreductase family protein	O.I.	H.G.	S.X.	Please select
0.09	12.0	GmaAffx.87820.1.S1_at	At4g18960	-	-	3e-14	At4g36980	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	12.0	Gma.14025.1.A1_at	At4g18960	-	-	7e-4	At1g32440	PKp3 (plastidial pyruvate kinase 3)	O.I.	H.G.	S.X.	Please select
0.05	8.0	Gma.7921.1.S1_at	At4g18960	-	-	3e-5	At5g27730	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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