Co-expression analysis

Gene ID	Zm.11141.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g64780: ATAMT1 (HF=1e-7)
Module size	10 genes
NF	0.26
%ile	21.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.60	Zm.11141.1.A1_at	BM338572	-	-	1e-7	At1g64780	ATAMT1	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.80	Zm.10412.1.S1_at	BM333072	choline/ethanolamine kinase	-	8e-25	At1g71697	ATCK1 (CHOLINE KINASE 1)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.80	Zm.3799.1.A1_at	CK367871	hypothetical protein LOC100192947	-	3e-1	At2g03310	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.73	Zm.1615.1.S1_at	AY106014.1	hypothetical protein LOC100279676	-	1e+0	At5g23405	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.73	Zm.16151.1.A1_at	BI431175	gibberellin receptor GID1L2	-	5e+0	At2g42300	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.72	Zm.17998.1.A1_at	BG873837	-	-	2e-35	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.76	Zm.3864.1.A1_at	AY106452.1	calmodulin2	-	8e-80	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.76	Zm.18770.1.S1_at	CO525135	hypothetical protein LOC100280239	-	4e-1	At2g33220	-	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.82	Zm.2376.7.A1_at	BM079913	-	-	2e-2	At5g60370	unknown protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.75	Zm.4271.5.A1_at	AI881217	Hypothetical protein LOC100191665	-	2e+1	At3g55470	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.0	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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