Co-expression analysis

Gene ID Zm.11126.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g07880: SNAP29 (HF=2e+0)
Module size 6 genes
NF 0.66
%ile 87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.81Zm.11126.1.S1_atAA979835--2e+0At5g07880SNAP29O.I.H.G.S.X.
0.8094.00.88Zm.17158.3.A1_atBM078932--4e+0At3g08920rhodanese-like domain-containing proteinO.I.H.G.S.X.
0.6785.80.83Zm.3799.1.A1_atCK367871hypothetical protein LOC100192947-3e-1At2g03310unknown proteinO.I.H.G.S.X.
0.5976.10.83Zm.3864.1.A1_atAY106452.1calmodulin2-8e-80At3g56800CAM3 (CALMODULIN 3)O.I.H.G.S.X.
0.4455.70.88Zm.2376.7.A1_atBM079913--2e-2At5g60370unknown proteinO.I.H.G.S.X.
0.4048.50.83Zm.12573.1.A1_a_atBI233467hypothetical protein LOC100192765 /// hypothetical protein LOC100276406-2e+0At3g20450-O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.86Zm.7720.1.S1_atCK347322--2e-10At2g21630transport protein, putativeO.I.H.G.S.X.
0.6179.50.84Zm.15626.1.S1_atCA404507--1e-8At5g66510GAMMA CA3 (GAMMA CARBONIC ANHYDRASE 3)O.I.H.G.S.X.
0.6077.80.83Zm.14497.12.A1_atCA404826hypothetical protein LOC100192792-6e-22At1g07790HTB1O.I.H.G.S.X.
0.5065.70.78ZmAffx.78.1.S1_atAI665232--2e+1At5g24155squalene monooxygenase, putative / squalene epoxidase, putativeO.I.H.G.S.X.
0.5065.70.81Zm.17771.1.S1_atCF623570--5e+0At5g27860unknown proteinO.I.H.G.S.X.
0.5065.70.88Zm.730.1.A1_atAY104952.1hypothetical protein LOC100191862-4e-86At3g46440UXS5O.I.H.G.S.X.
0.4455.70.83Zm.2139.1.S1_atCF627469hypothetical protein LOC100274481-7e-1At3g15010RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.4352.80.74Zm.15039.1.S1_atBM337781--5e-2At1g73890protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4048.50.73Zm.1503.2.S1_atBG840165hypothetical protein LOC100278602-6e-1At2g45530zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4048.50.78Zm.5067.1.A1_atCF057843--8e-1At3g55254-O.I.H.G.S.X.
0.3844.20.79Zm.10412.1.S1_atBM333072choline/ethanolamine kinase-8e-25At1g71697ATCK1 (CHOLINE KINASE 1)O.I.H.G.S.X.
0.3538.90.83Zm.5603.1.A1_atCF626554hypothetical protein LOC100276587-6e+0At5g56600PRF3 (PROFILIN 3)O.I.H.G.S.X.
0.3538.90.78Zm.13270.1.A1_atAY107233.1--4e-13At1g34000OHP2 (ONE-HELIX PROTEIN 2)O.I.H.G.S.X.
0.3131.60.78Zm.13272.1.S1_a_atAY530961.1dTDP-glucose 4,6-dehydratase-1e-58At1g08200AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2)O.I.H.G.S.X.
0.3131.60.81Zm.1820.1.S1_atCF009592--2e-3At5g46780VQ motif-containing proteinO.I.H.G.S.X.
0.3029.80.76Zm.18770.1.S1_atCO525135hypothetical protein LOC100280239-4e-1At2g33220-O.I.H.G.S.X.
0.2928.10.69Zm.2494.1.A1_atBE129776--3e+0At5g62520SRO5 (SIMILAR TO RCD ONE 5)O.I.H.G.S.X.
0.2828.10.79Zm.4274.1.S1_atCO527025hypothetical protein LOC100191539-1e-3At2g40890CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3)O.I.H.G.S.X.
0.2724.60.79Zm.12659.1.S1_atBU197773--8e-15At1g29400AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5)O.I.H.G.S.X.
0.2622.70.78Zm.856.1.A1_x_atU82815.1nucleolar histone deacetylase HD2-p39-1e-2At5g22650HD2B (HISTONE DEACETYLASE 2B)O.I.H.G.S.X.
0.2622.70.69Zm.9195.1.A1_atCF623343hypothetical protein LOC100272859-1e-7At3g14910unknown proteinO.I.H.G.S.X.
0.2521.30.74Zm.17998.1.A1_atBG873837--2e-35At3g14940ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.298.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.597.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.497.5GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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