Co-expression analysis

Gene ID	Zm.11126.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g07880: SNAP29 (HF=2e+0)
Module size	6 genes
NF	0.66
%ile	87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.81	Zm.11126.1.S1_at	AA979835	-	-	2e+0	At5g07880	SNAP29	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.88	Zm.17158.3.A1_at	BM078932	-	-	4e+0	At3g08920	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.83	Zm.3799.1.A1_at	CK367871	hypothetical protein LOC100192947	-	3e-1	At2g03310	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.83	Zm.3864.1.A1_at	AY106452.1	calmodulin2	-	8e-80	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.88	Zm.2376.7.A1_at	BM079913	-	-	2e-2	At5g60370	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.83	Zm.12573.1.A1_a_at	BI233467	hypothetical protein LOC100192765 /// hypothetical protein LOC100276406	-	2e+0	At3g20450	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.129119.1.S1_at, orthologous to the query gene, Zm.11126.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.42	60.9	TaAffx.129119.1.S1_at	At5g07880	-	-	2e+0	Atmg00860	-	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.27157.1.S1_at	At5g07880	-	-	7e-3	At2g38660	tetrahydrofolate dehydrogenase/cyclohydrolase, putative	O.I.	H.G.	S.X.	Please select
0.40	58.4	Ta.7373.1.S1_at	At5g07880	-	-	2e-1	At3g08640	alphavirus core protein family	O.I.	H.G.	S.X.	Please select
0.30	40.9	Ta.13976.1.S1_a_at	At5g07880	-	-	4e+0	At5g23100	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.2719.1.S1_at	At5g07880	-	-	4e-1	At1g05010	EFE (ETHYLENE-FORMING ENZYME)	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.6453.1.S1_s_at	At5g07880	-	-	2e+0	At5g48290	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage