Co-expression analysis

Gene ID	Zm.11126.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g07880: SNAP29 (HF=2e+0)
Module size	6 genes
NF	0.66
%ile	87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.81	Zm.11126.1.S1_at	AA979835	-	-	2e+0	At5g07880	SNAP29	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.88	Zm.17158.3.A1_at	BM078932	-	-	4e+0	At3g08920	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.83	Zm.3799.1.A1_at	CK367871	hypothetical protein LOC100192947	-	3e-1	At2g03310	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.83	Zm.3864.1.A1_at	AY106452.1	calmodulin2	-	8e-80	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.88	Zm.2376.7.A1_at	BM079913	-	-	2e-2	At5g60370	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.83	Zm.12573.1.A1_a_at	BI233467	hypothetical protein LOC100192765 /// hypothetical protein LOC100276406	-	2e+0	At3g20450	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.209119.1.S1_at, orthologous to the query gene, Zm.11126.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	88.1	PtpAffx.209119.1.S1_at	At5g07880	hypothetical protein	-	2e+0	At2g37870	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.158009.1.A1_a_at	At5g07880	-	-	1e+0	At4g12580	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	PtpAffx.219595.1.S1_at	At5g07880	-	-	8e+0	At5g09225	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.02	3.6	PtpAffx.219938.1.S1_at	At5g07880	hypothetical protein	-	3e+0	At2g37330	ALS3 (ALUMINUM SENSITIVE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.20668.1.S1_at	At5g07880	-	-	2e+0	At1g25682	cell cycle control protein-related	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.00	0.4	PtpAffx.50265.1.S1_s_at	At5g07880	hypothetical protein	-	1e-10	At3g24230	pectate lyase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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