Co-expression analysis

Gene ID	Zm.11126.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g07880: SNAP29 (HF=2e+0)
Module size	6 genes
NF	0.66
%ile	87.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.81	Zm.11126.1.S1_at	AA979835	-	-	2e+0	At5g07880	SNAP29	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.88	Zm.17158.3.A1_at	BM078932	-	-	4e+0	At3g08920	rhodanese-like domain-containing protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.83	Zm.3799.1.A1_at	CK367871	hypothetical protein LOC100192947	-	3e-1	At2g03310	unknown protein	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.83	Zm.3864.1.A1_at	AY106452.1	calmodulin2	-	8e-80	At3g56800	CAM3 (CALMODULIN 3)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.88	Zm.2376.7.A1_at	BM079913	-	-	2e-2	At5g60370	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.83	Zm.12573.1.A1_a_at	BI233467	hypothetical protein LOC100192765 /// hypothetical protein LOC100276406	-	2e+0	At3g20450	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL1205Contig1_at, orthologous to the query gene, Zm.11126.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.89	93.5	PsAffx.CL1205Contig1_at	At5g07880	-	-	1e+0	At5g58230	MSI1 (MULTICOPY SUPRESSOR OF IRA1)	O.I.	H.G.	S.X.	Please select
0.76	89.7	PsAffx.CL725Contig1_at	At5g07880	-	-	8e-2	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	O.I.	H.G.	S.X.	Please select
0.74	89.2	PsAffx.CL359Contig1_at	At5g07880	-	-	2e+0	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.71	87.8	PsAffx.C1000027_s_at	At5g07880	-	-	3e-2	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.69	86.8	PsAffx.C191000027_at	At5g07880	-	-	7e-1	At2g20420	succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative	O.I.	H.G.	S.X.	Please select
0.68	86.4	PsAffx.C151000027_s_at	At5g07880	-	-	4e+0	At3g54120	reticulon family protein (RTNLB12)	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.CL82Contig1_at	At5g07880	-	-	4e-32	At2g47170	ARF1A1C	O.I.	H.G.	S.X.	Please select
0.66	84.0	PsAffx.CL262Contig1_at	At5g07880	-	-	3e+0	At1g05330	unknown protein	O.I.	H.G.	S.X.	Please select
0.66	84.0	PsAffx.CL2Contig13_s_at	At5g07880	-	-	3e+0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.65	83.8	PsAffx.CL89Contig1_at	At5g07880	-	-	2e-1	At1g59900	AT-E1 ALPHA	O.I.	H.G.	S.X.	Please select
0.65	83.8	PsAffx.CL72Contig3_at	At5g07880	-	-	2e+0	At4g30480	tetratricopeptide repeat (TPR)-containing protein	O.I.	H.G.	S.X.	Please select
0.65	83.8	PsAffx.CL122Contig1_at	At5g07880	-	-	1e-1	At3g56350	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	O.I.	H.G.	S.X.	Please select
0.64	83.4	PsAffx.CL72Contig2_at	At5g07880	-	-	3e-1	At2g25190	unknown protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	PsAffx.CL243Contig1_at	At5g07880	-	-	4e-3	At5g08530	CI51 (51 kDa subunit of complex I)	O.I.	H.G.	S.X.	Please select
0.62	82.1	PsAffx.CL377Contig1_at	At5g07880	-	-	8e+0	At5g58640	selenoprotein-related	O.I.	H.G.	S.X.	Please select
0.61	81.8	PsAffx.CL56Contig1_at	At5g07880	-	-	6e-7	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	O.I.	H.G.	S.X.	Please select
0.58	78.8	PsAffx.CL62Contig1_at	At5g07880	-	-	3e+0	At3g44235	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	78.8	PsAffx.C32000008_at	At5g07880	-	-	1e+0	At5g03750	-	O.I.	H.G.	S.X.	Please select
0.57	78.8	PsAffx.CL394Contig1_s_at	At5g07880	-	-	7e+0	At4g31830	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.2	PsAffx.CL995Contig1_at	At5g07880	-	-	3e+0	At3g01970	WRKY45	O.I.	H.G.	S.X.	Please select
0.51	72.3	PsAffx.CL343Contig1_at	At5g07880	-	-	4e+0	At3g54120	reticulon family protein (RTNLB12)	O.I.	H.G.	S.X.	Please select
0.49	68.3	PsAffx.CL2Contig12_at	At5g07880	-	-	8e-1	At2g42280	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.47	66.6	PsAffx.CL136Contig1_at	At5g07880	-	-	2e+0	At1g28580	GDSL-motif lipase, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	PsAffx.CL103Contig1_at	At5g07880	-	-	3e-1	At2g31862	-	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.67258.1.S1_s_at	At5g07880	-	-	1e+1	Atcg00750	-	O.I.	H.G.	S.X.	Please select
0.46	65.5	GmaAffx.62767.2.S1_s_at	At5g07880	-	-	3e+0	At4g29030	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.43	60.6	PsAffx.CL85Contig1_at	At5g07880	-	-	4e-10	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	O.I.	H.G.	S.X.	Please select
0.42	59.3	PsAffx.CL483Contig1_at	At5g07880	-	-	8e+0	At4g01670	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	58.1	PsAffx.CL112Contig1_at	At5g07880	-	-	9e-7	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.C65000037_s_at	At5g07880	-	-	9e-10	At5g08680	ATP synthase beta chain, mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.40	57.1	PsAffx.CL2Contig5_at	At5g07880	-	-	3e+0	At5g24600	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.53630.1.S1_s_at	At5g07880	-	-	4e+1	At5g01750	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.71867.1.S1_at	At5g07880	-	-	1e+1	At5g62720	integral membrane HPP family protein	O.I.	H.G.	S.X.	Please select
0.39	54.5	GmaAffx.85503.1.S1_s_at	At5g07880	-	-	4e-9	At1g08360	60S ribosomal protein L10A (RPL10aA)	O.I.	H.G.	S.X.	Please select
0.38	53.3	PsAffx.C55000004_s_at	At5g07880	-	-	9e-2	At2g47470	UNE5 (UNFERTILIZED EMBRYO SAC 5)	O.I.	H.G.	S.X.	Please select
0.32	43.7	PsAffx.CL58Contig1_s_at	At5g07880	-	-	6e+0	At5g47930	40S ribosomal protein S27 (RPS27D)	O.I.	H.G.	S.X.	Please select
0.27	35.7	PsAffx.CL2Contig9_at	At5g07880	-	-	2e-21	At5g47200	ATRAB1A	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage