CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.10850.1.S1_at

Gene name ZIM motif family protein
Homology with Arabidopsis Similar to At5g40420: OLEO2 (OLEOSIN 2) (HF=8e-1)

Module size 6 genes

NF 0.31

%ile 29.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 92.1 0.97 Zm.10850.1.S1_at AY106263.1 ZIM motif family protein - 8e-1 At5g40420 OLEO2 (OLEOSIN 2) O.I. H.G. S.X.
0.50 65.7 0.97 Zm.10850.1.A1_at AY106263.1 - - 8e-1 At5g40420 OLEO2 (OLEOSIN 2) O.I. H.G. S.X.
0.50 65.7 0.97 Zm.457.1.S1_at AF147725.1 ribosomal protein L29 - 2e+0 At2g46330 AGP16 (ARABINOGALACTAN PROTEIN 16) O.I. H.G. S.X.
0.44 55.7 0.97 Zm.11832.1.S1_at BM381116 hypothetical protein LOC100277564 - 1e-7 At1g57540 unknown protein O.I. H.G. S.X.
0.19 12.8 0.97 Zm.17643.1.S1_at CK368600 - - 2e-1 At5g54850 unknown protein O.I. H.G. S.X.
0.18 11.6 0.97 Zm.6478.1.S1_at AI692059 - - 4e-21 At1g09800 tRNA pseudouridine synthase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.96	Zm.1662.1.A1_at	CF626953	-	-	6e-1	At5g35570	unknown protein	O.I.	H.G.	S.X.
0.44	55.7	0.96	Zm.5434.1.S1_at	BM073094	50S ribosomal protein L6	-	2e-18	At1g05190	emb2394 (embryo defective 2394)	O.I.	H.G.	S.X.
0.43	52.8	0.96	Zm.4271.5.S1_x_at	AI881217	Hypothetical protein LOC100191665	-	2e+1	At3g55470	C2 domain-containing protein	O.I.	H.G.	S.X.
0.38	44.2	0.94	Zm.2874.1.A1_at	AY111532.1	hypothetical protein LOC100194024	-	3e-2	At4g32660	AME3	O.I.	H.G.	S.X.
0.36	41.3	0.91	Zm.490.1.S1_a_at	AF216853.1	coatomer protein2	-	9e-25	At2g34840	coatomer protein epsilon subunit family protein / COPE family protein	O.I.	H.G.	S.X.
0.35	38.9	0.95	Zm.16191.1.S1_at	BF727710	Hypothetical protein LOC100191371	-	9e-1	At4g08240	unknown protein	O.I.	H.G.	S.X.
0.33	36.0	0.95	Zm.3246.1.S1_a_at	AA979858	multicystatin	-	4e-1	At4g04360	unknown protein	O.I.	H.G.	S.X.
0.32	33.4	0.94	Zm.166.2.S1_at	AI664966	Pyruvate decarboxylase1	-	3e+0	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	O.I.	H.G.	S.X.
0.32	33.4	0.93	Zm.14301.1.S1_at	AI712237	hypothetical protein LOC100192964	-	2e-22	At3g61620	RRP41	O.I.	H.G.	S.X.
0.31	31.6	0.93	Zm.14528.1.S1_at	AJ437284.1	embryo-sac basal-endosperm-layer embryo-surrounding-region2	-	2e+0	At2g35250	unknown protein	O.I.	H.G.	S.X.
0.31	31.6	0.95	Zm.5069.1.A1_at	AY111851.1	hypothetical protein LOC100192804	-	2e-4	At1g61460	S-locus protein kinase, putative	O.I.	H.G.	S.X.
0.29	28.1	0.94	Zm.512.1.A1_a_at	AF384037.1	nucleosome/chromatin assembly factor C	-	9e-69	At2g19520	FVE	O.I.	H.G.	S.X.
0.27	24.6	0.95	Zm.73.1.A1_at	BM267895	alpha tubulin6	-	0	At5g19780	TUA5	O.I.	H.G.	S.X.
0.27	24.6	0.96	Zm.15527.1.A1_at	CK145031	hypothetical protein LOC100274385	-	4e-3	At2g30560	glycine-rich protein	O.I.	H.G.	S.X.
0.27	24.6	0.97	ZmAffx.721.1.A1_at	AI665110	hypothetical protein LOC100274867	-	3e+0	At3g10980	unknown protein	O.I.	H.G.	S.X.
0.26	22.7	0.95	Zm.12721.1.A1_at	CO524007	hypothetical protein LOC100273012	-	2e-4	At5g66410	PLP3b (Phosducin-like protein 3 homolog)	O.I.	H.G.	S.X.
0.25	21.3	0.96	Zm.3212.1.A1_at	AY111219.1	golgi SNARE 12 protein	-	9e-1	At4g39460	SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1)	O.I.	H.G.	S.X.
0.25	21.3	0.96	Zm.3892.3.A1_at	AF136829.1	elongation factor 1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.1 98.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1 98.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7 97.9 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6 97.6 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4 97.0 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8 88.9 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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