Co-expression analysis

Gene ID	Zm.10850.1.S1_at
Gene name	ZIM motif family protein
Homology with Arabidopsis	Similar to At5g40420: OLEO2 (OLEOSIN 2) (HF=8e-1)
Module size	6 genes
NF	0.31
%ile	29.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.97	Zm.10850.1.S1_at	AY106263.1	ZIM motif family protein	-	8e-1	At5g40420	OLEO2 (OLEOSIN 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.10850.1.A1_at	AY106263.1	-	-	8e-1	At5g40420	OLEO2 (OLEOSIN 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.457.1.S1_at	AF147725.1	ribosomal protein L29	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.11832.1.S1_at	BM381116	hypothetical protein LOC100277564	-	1e-7	At1g57540	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.97	Zm.17643.1.S1_at	CK368600	-	-	2e-1	At5g54850	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.97	Zm.6478.1.S1_at	AI692059	-	-	4e-21	At1g09800	tRNA pseudouridine synthase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8	88.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1609442_at, orthologous to the query gene, Zm.10850.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	84.3	1609442_at	At5g40420	hypothetical protein LOC100243127	-	3e-4	At3g05800	transcription factor	O.I.	H.G.	S.X.	Please select
0.67	87.9	1620804_at	At5g40420	hypothetical protein LOC100267227	-	3e-114	At1g55360	unknown protein	O.I.	H.G.	S.X.	Please select
0.60	81.9	1608829_at	At5g40420	hypothetical protein LOC100258592	-	9e-24	At4g03415	catalytic/ protein serine/threonine phosphatase	O.I.	H.G.	S.X.	Please select
0.53	75.2	1609302_at	At5g40420	similar to somatic embryogenesis receptor kinase	-	7e-14	At1g34210	SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1622185_at	At5g40420	-	-	3e-2	At1g78915	binding	O.I.	H.G.	S.X.	Please select
0.33	45.7	1614917_at	At5g40420	hypothetical protein LOC100267340	-	4e+0	At5g60660	PIP2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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