Co-expression analysis

Gene ID	Zm.10850.1.S1_at
Gene name	ZIM motif family protein
Homology with Arabidopsis	Similar to At5g40420: OLEO2 (OLEOSIN 2) (HF=8e-1)
Module size	6 genes
NF	0.31
%ile	29.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.97	Zm.10850.1.S1_at	AY106263.1	ZIM motif family protein	-	8e-1	At5g40420	OLEO2 (OLEOSIN 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.10850.1.A1_at	AY106263.1	-	-	8e-1	At5g40420	OLEO2 (OLEOSIN 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.457.1.S1_at	AF147725.1	ribosomal protein L29	-	2e+0	At2g46330	AGP16 (ARABINOGALACTAN PROTEIN 16)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.11832.1.S1_at	BM381116	hypothetical protein LOC100277564	-	1e-7	At1g57540	unknown protein	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.97	Zm.17643.1.S1_at	CK368600	-	-	2e-1	At5g54850	unknown protein	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.97	Zm.6478.1.S1_at	AI692059	-	-	4e-21	At1g09800	tRNA pseudouridine synthase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.8	88.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig11225_at, orthologous to the query gene, Zm.10850.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	87.1	Contig11225_at	At5g40420	-	-	7e+0	At5g13220	JAZ10 (JASMONATE-ZIM-DOMAIN PROTEIN 10)	O.I.	H.G.	S.X.	Please select
0.55	72.0	Contig24721_at	At5g40420	-	-	5e+0	At2g41990	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	72.0	HK06I18r_at	At5g40420	-	-	1e+0	At2g40475	unknown protein	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig2169_at	At5g40420	-	-	1e+1	At5g51105	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	68.3	Contig1340_at	At5g40420	-	-	2e-55	At5g21274	CAM6 (CALMODULIN 6)	O.I.	H.G.	S.X.	Please select
0.49	63.7	Contig10596_at	At5g40420	-	-	8e-10	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig20828_at	At5g40420	-	-	3e-1	At4g15360	CYP705A3	O.I.	H.G.	S.X.	Please select
0.41	53.9	HU09H10u_at	At5g40420	-	-	1e+1	At4g09647	-	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig12959_at	At5g40420	-	-	4e-3	At1g31650	ROPGEF14	O.I.	H.G.	S.X.	Please select
0.40	53.1	HI04I05u_at	At5g40420	-	-	2e-2	At5g41060	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig1613_at	At5g40420	-	-	3e-1	At1g43970	unknown protein	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig16881_at	At5g40420	-	-	1e-1	At2g01460	ATP binding / kinase	O.I.	H.G.	S.X.	Please select
0.37	47.9	HVSMEb0008F12r2_s_at	At5g40420	-	-	8e-5	At2g25970	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.36	47.1	Contig2134_at	At5g40420	-	-	7e-4	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig7556_s_at	At5g40420	-	-	5e-1	At1g21326	VQ motif-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig10816_at	At5g40420	-	-	2e+0	At3g09160	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig12896_at	At5g40420	-	-	2e-3	At5g08630	DDT domain-containing protein	O.I.	H.G.	S.X.	Please select
0.28	35.5	Contig11456_at	At5g40420	-	-	6e-1	At3g32090	transcription factor-related	O.I.	H.G.	S.X.	Please select
0.24	27.2	Contig10899_at	At5g40420	-	-	3e+0	At3g63530	BB (BIG BROTHER)	O.I.	H.G.	S.X.	Please select
0.23	26.1	rbags1d23_s_at	At5g40420	-	-	1e+1	At5g50000	protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.22	24.2	Contig13792_s_at	At5g40420	-	-	4e+0	At5g41614	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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