Co-expression analysis

Gene ID Zm.10827.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At1g65730: YSL7 (YELLOW STRIPE LIKE 7) (HF=8e-2)
Module size 8 genes
NF 0.53
%ile 69.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6381.10.97Zm.10827.1.S1_atBQ619419--8e-2At1g65730YSL7 (YELLOW STRIPE LIKE 7)O.I.H.G.S.X.
0.6077.80.97Zm.3999.1.S1_atCF024332hypothetical protein LOC100276811-3e+0At5g39860PRE1 (PACLOBUTRAZOL RESISTANCE1)O.I.H.G.S.X.
0.6077.80.97Zm.7611.2.A1_atBM268818--2e-3At1g49400emb1129 (embryo defective 1129)O.I.H.G.S.X.
0.5571.60.97Zm.6754.1.A1_atAI396158hypothetical protein LOC100279965-4e-2At4g36530hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.4861.30.97Zm.3767.2.A1_atBM073671--1e-7At5g20890chaperonin, putativeO.I.H.G.S.X.
0.4658.40.97Zm.6644.2.A1_atAY109212.1--4e+0At5g42050-O.I.H.G.S.X.
0.4149.70.97Zm.2716.1.A1_atCD440659--3e+0At4g28700AMT1O.I.H.G.S.X.
0.3844.20.98Zm.15852.2.A1_atAY108720.1--1e-41At5g03430phosphoadenosine phosphosulfate (PAPS) reductase family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5369.10.97Zm.6665.1.S1_atAY104195.1hypothetical protein LOC100274698-3e-7At5g49720ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1)O.I.H.G.S.X.
0.5065.70.97Zm.17090.1.S1_atAW155707transferase, transferring glycosyl groups-2e-4At2g20810GAUT10 (GALACTURONOSYLTRANSFERASE 10)O.I.H.G.S.X.
0.4658.40.97Zm.15201.1.A1_atBM348856--3e-1At4g33660unknown proteinO.I.H.G.S.X.
0.4455.70.97Zm.4335.3.A1_atAY109325.1--1e-3At2g24050MIF4G domain-containing protein / MA3 domain-containing proteinO.I.H.G.S.X.
0.4455.70.96Zm.4288.1.A1_atAI622454cyclin IaZm-4e-3At2g26760CYCB1O.I.H.G.S.X.
0.4251.30.96Zm.12606.1.S1_atAY280629.1single myb histone3-3e-3At1g17520DNA-binding protein, putativeO.I.H.G.S.X.
0.4048.50.97Zm.18485.1.S1_atAY104422.1DNA binding protein-4e-8At1g71260ATWHY2 (A. THALIANA WHIRLY 2)O.I.H.G.S.X.
0.3641.30.97Zm.5048.6.A1_a_atBM380925hypothetical protein LOC100279926 /// endoplasmin-3e-36At4g24190SHD (SHEPHERD)O.I.H.G.S.X.
0.3538.90.95Zm.18138.1.A1_atCF002755hypothetical protein LOC100216629-9e-5At1g16810unknown proteinO.I.H.G.S.X.
0.3538.90.97Zm.19300.1.S1_atCO522732DNA repair protein RAD51-3e+0At2g45280ATRAD51CO.I.H.G.S.X.
0.3437.20.95Zm.3536.1.A1_atBM340706glucan endo-1,3-beta-glucosidase 4-3e+0At2g18050HIS1-3 (HISTONE H1-3)O.I.H.G.S.X.
0.3437.20.96Zm.2374.1.A1_atAI734567hypothetical protein LOC100192983-3e+0At3g46010ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)O.I.H.G.S.X.
0.3233.40.93Zm.13826.1.S1_atBQ293656--2e-5At1g75200flavodoxin family protein / radical SAM domain-containing proteinO.I.H.G.S.X.
0.3233.40.94Zm.12337.1.S1_atCN844316--4e+0At5g36662-O.I.H.G.S.X.
0.3233.40.96Zm.1494.1.A1_atBG842622--1e-2At2g20825ULT2 (ULTRAPETALA 2)O.I.H.G.S.X.
0.3029.80.96Zm.19340.1.A1_atCO530664uracil phosphoribosyltransferase-1e+0At4g30180transcription factor/ transcription regulatorO.I.H.G.S.X.
0.3029.80.98Zm.6054.2.S1_atAY104332.1--6e-4At2g41740VLN2 (VILLIN 2)O.I.H.G.S.X.
0.2928.10.96Zm.6356.1.A1_atBM332624trafficking protein particle complex subunit 4-1e-5At5g02280synbindin, putativeO.I.H.G.S.X.
0.2928.10.96Zm.18523.1.A1_atCO519497hypothetical protein LOC100278529-5e+0At5g25090plastocyanin-like domain-containing proteinO.I.H.G.S.X.
0.2928.10.97Zm.3959.2.A1_a_atAY110235.1hypothetical protein LOC100193090 /// hypothetical protein LOC100216942 /// integral membrane protein like-1e-20At1g34020transporter-relatedO.I.H.G.S.X.
0.2828.10.95Zm.7132.1.A1_a_atBM381861hypothetical protein LOC100275673-5e+0At5g41761unknown proteinO.I.H.G.S.X.
0.2724.60.96Zm.5800.1.S1_atCK394709fiber protein Fb11-1e+0At3g09770zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2724.60.97Zm.17271.5.A1_atBM269169hypothetical protein LOC100276951-3e-1At2g33430DAL1 (DIFFERENTIATION AND GREENING-LIKE 1)O.I.H.G.S.X.
0.2724.60.96Zm.5693.1.A1_atAI629973hypothetical protein LOC100193539-6e-4At1g35510unknown proteinO.I.H.G.S.X.
0.2724.60.96Zm.4786.1.A1_atCF633671--2e-1At3g25150nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2724.60.96Zm.8900.2.A1_atAI75904050S ribosomal protein L9-3e+0At3g01328-O.I.H.G.S.X.
0.2622.70.95Zm.4566.1.A1_atAI734813--9e-13At1g65650UCH2O.I.H.G.S.X.
0.2622.70.96Zm.886.2.S1_atCK827386--5e-2At2g39050hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.2622.70.97Zm.15678.1.A1_atCD440195hypothetical protein LOC100192926-7e+0At4g18280glycine-rich cell wall protein-relatedO.I.H.G.S.X.
0.2521.30.97Zm.7392.1.A1_atCF041444hypothetical protein LOC100276454-6e+0At5g42850-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.598.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.798.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320443protocol: mRNA - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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