Co-expression analysis

Gene ID	Zm.10818.1.S1_at
Gene name	hypothetical protein LOC100273163
Homology with Arabidopsis	Similar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=1e-4)
Module size	6 genes
NF	0.05
%ile	2.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.93	Zm.10818.1.S1_at	CF650494	hypothetical protein LOC100273163	-	1e-4	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.13026.1.S1_at	AY111398.1	-	-	3e-1	At4g28930	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.96	Zm.9039.1.A1_at	BM078424	hypothetical protein LOC100193374	-	5e-1	At1g55310	SR33	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.96	Zm.5358.1.A1_at	CF003205	ras-related protein Rab11D	-	9e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.95	Zm.8194.1.A1_at	BM380105	hypothetical protein LOC100274820 /// hypothetical protein LOC100276986	-	7e+0	At5g04750	F1F0-ATPase inhibitor protein, putative	O.I.	H.G.	S.X.	Please select
0.01	0.3	0.96	Zm.9846.1.A1_at	BM340911	-	-	8e-2	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the wheat gene, Ta.29424.1.A1_a_at, orthologous to the query gene, Zm.10818.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	93.4	Ta.29424.1.A1_a_at	At4g02610	-	-	3e-1	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.48	69.0	TaAffx.129113.5.S1_at	At4g02610	-	-	3e+0	At1g75240	AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33)	O.I.	H.G.	S.X.	Please select
0.45	65.2	TaAffx.106023.1.S1_at	At4g02610	-	-	7e-2	At3g57160	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	54.7	Ta.3465.1.A1_at	At4g02610	-	-	5e-1	At5g20560	beta-1,3-glucanase, putative	O.I.	H.G.	S.X.	Please select
0.37	53.0	Ta.28132.1.S1_x_at	At4g02610	-	-	8e-14	At4g27230	HTA2 (histone H2A)	O.I.	H.G.	S.X.	Please select
0.35	49.8	TaAffx.119471.1.S1_at	At4g02610	-	-	1e-2	At5g65860	ankyrin repeat family protein	O.I.	H.G.	S.X.	Please select
0.35	49.8	Ta.10329.3.S1_at	At4g02610	-	-	2e-21	At5g59690	histone H4	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.3224.2.S1_at	At4g02610	-	-	6e-4	At2g40550	ETG1 (E2F TARGET GENE 1)	O.I.	H.G.	S.X.	Please select
0.33	46.9	Ta.10329.17.S1_x_at	At4g02610	-	-	6e-22	At5g59970	histone H4	O.I.	H.G.	S.X.	Please select
0.30	40.9	TaAffx.66316.1.S1_at	At4g02610	-	-	4e-1	At4g35040	bZIP transcription factor family protein	O.I.	H.G.	S.X.	Please select
0.29	39.2	Ta.10329.20.S1_x_at	At4g02610	-	-	9e-15	At3g53730	histone H4	O.I.	H.G.	S.X.	Please select
0.28	39.2	Ta.6311.2.S1_at	At4g02610	-	-	1e+0	At1g63410	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.10941.1.A1_at	At4g02610	-	-	1e+0	At5g61490	-	O.I.	H.G.	S.X.	Please select
0.27	35.6	TaAffx.120653.1.S1_at	At4g02610	-	-	3e+0	At5g53120	SPDS3 (SPERMIDINE SYNTHASE 3)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.2300.1.S1_a_at	At4g02610	-	-	8e+0	At5g08190	NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)	O.I.	H.G.	S.X.	Please select
0.27	35.6	Ta.5793.2.S1_at	At4g02610	-	-	6e-14	At5g55230	ATMAP65-1 (MICROTUBULE-ASSOCIATED PROTEINS 65-1)	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.13526.1.S1_at	At4g02610	-	-	1e-2	At1g16520	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	33.6	Ta.14587.1.S1_at	At4g02610	-	-	8e-3	At3g29370	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.91620.1.A1_s_at	At4g02610	-	-	4e+0	At1g28270	RALFL4 (ralf-like 4)	O.I.	H.G.	S.X.	Please select
0.25	32.1	TaAffx.44615.1.A1_at	At4g02610	-	-	5e-9	At1g07370	PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN)	O.I.	H.G.	S.X.	Please select
0.25	32.1	Ta.3224.1.A1_at	At4g02610	-	-	4e-1	At2g40550	ETG1 (E2F TARGET GENE 1)	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.29309.1.S1_at	At4g02610	-	-	2e+0	At1g23360	UbiE/COQ5 methyltransferase family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	TaAffx.23712.1.S1_at	At4g02610	-	-	3e-1	At4g24015	zinc finger (RING-H2 type) protein-related	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.15883.1.S1_at	At4g02610	-	-	9e-3	At5g53320	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.7561.1.S1_at	At4g02610	-	-	7e-67	At4g02060	PRL (PROLIFERA)	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.18385.1.S1_at	At4g02610	-	-	1e+0	At2g01290	ribose-5-phosphate isomerase	O.I.	H.G.	S.X.	Please select
0.18	21.0	Ta.18665.1.S1_at	At4g02610	-	-	3e+0	At1g03055	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	19.8	TaAffx.106548.1.S1_at	At4g02610	-	-	7e-1	At5g02560	HTA12	O.I.	H.G.	S.X.	Please select
0.08	9.4	Ta.7056.1.A1_s_at	At4g02610	-	-	1e+0	At5g59060	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	8.6	TaAffx.116089.1.S1_at	At4g02610	-	-	3e-5	At3g19590	WD-40 repeat family protein / mitotic checkpoint protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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