Co-expression analysis

Gene ID	Zm.10818.1.S1_at
Gene name	hypothetical protein LOC100273163
Homology with Arabidopsis	Similar to At4g02610: tryptophan synthase, alpha subunit, putative (HF=1e-4)
Module size	6 genes
NF	0.05
%ile	2.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.93	Zm.10818.1.S1_at	CF650494	hypothetical protein LOC100273163	-	1e-4	At4g02610	tryptophan synthase, alpha subunit, putative	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.13026.1.S1_at	AY111398.1	-	-	3e-1	At4g28930	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.96	Zm.9039.1.A1_at	BM078424	hypothetical protein LOC100193374	-	5e-1	At1g55310	SR33	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.96	Zm.5358.1.A1_at	CF003205	ras-related protein Rab11D	-	9e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.95	Zm.8194.1.A1_at	BM380105	hypothetical protein LOC100274820 /// hypothetical protein LOC100276986	-	7e+0	At5g04750	F1F0-ATPase inhibitor protein, putative	O.I.	H.G.	S.X.	Please select
0.01	0.3	0.96	Zm.9846.1.A1_at	BM340911	-	-	8e-2	At1g04445	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

A co-expression module including the barley gene, Contig23347_at, orthologous to the query gene, Zm.10818.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig23347_at	At4g02610	-	-	9e-8	At3g54640	TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)	O.I.	H.G.	S.X.	Please select
0.58	74.9	HVSMEn0004H06r2_at	At4g02610	-	-	4e-16	At2g18390	TTN5 (TITAN 5)	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig19539_at	At4g02610	-	-	2e-1	At4g11385	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.3	EBan01_SQ003_M14_at	At4g02610	-	-	9e+0	At4g16980	arabinogalactan-protein family	O.I.	H.G.	S.X.	Please select
0.54	70.3	Contig12885_at	At4g02610	-	-	4e-12	At3g48620	-	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig1891_at	At4g02610	-	-	3e+0	At1g58300	ho4 (HEME OXYGENASE 4)	O.I.	H.G.	S.X.	Please select
0.44	58.9	Contig16821_at	At4g02610	-	-	4e+0	Atmg00280	-	O.I.	H.G.	S.X.	Please select
0.39	50.5	Contig10764_at	At4g02610	-	-	6e+0	At5g42965	nucleic acid binding / ribonuclease H	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig12950_at	At4g02610	-	-	3e-6	At1g76510	ARID/BRIGHT DNA-binding domain-containing protein	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig5204_at	At4g02610	-	-	5e-1	At5g47150	YDG/SRA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	HVSMEm0004M03r2_at	At4g02610	-	-	8e+0	At4g29035	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	HD02M14r_at	At4g02610	-	-	8e-1	At5g30510	RPS1 (RIBOSOMAL PROTEIN S1)	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig15204_at	At4g02610	-	-	6e-7	At1g01800	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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