Co-expression analysis

Gene ID	Zm.10811.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At4g14730: transmembrane protein-related (HF=8e+0)
Module size	13 genes
NF	0.87
%ile	99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.99	Zm.10811.2.S1_at	BM079148	-	-	8e+0	At4g14730	transmembrane protein-related	O.I.	H.G.	S.X.	Please select
0.96	99.8	0.99	Zm.10812.1.A1_at	CD976050	-	-	2e-4	At2g28450	zinc finger (CCCH-type) family protein	O.I.	H.G.	S.X.	Please select
0.92	99.2	0.99	Zm.17408.1.A1_at	BE129731	hypothetical protein LOC100273071	-	4e-1	At2g41380	embryo-abundant protein-related	O.I.	H.G.	S.X.	Please select
0.92	99.2	0.99	Zm.14513.4.S1_at	CK827180	hypothetical protein LOC100192746	-	7e-31	At1g09200	histone H3	O.I.	H.G.	S.X.	Please select
0.89	96.8	0.99	Zm.7018.1.S1_at	AY103620.1	DNA-directed RNA polymerase II 8.2 kDa polypeptide	-	9e-12	At1g61700	DNA-directed RNA polymerase II, putative (RPB10)	O.I.	H.G.	S.X.	Please select
0.88	96.7	0.99	Zm.1100.1.S1_at	AY107948.1	-	-	4e+0	At5g37475	translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.87	96.4	0.99	Zm.16913.1.S1_at	BQ619268	GT1 protein	-	2e-24	At4g16370	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.99	Zm.10811.7.S1_at	BG837489	Glycine-rich protein	-	7e-3	At4g39260	GR-RBP8	O.I.	H.G.	S.X.	Please select
0.85	95.9	0.99	Zm.1438.1.S1_at	BM073074	hypothetical protein LOC100191302	-	2e-13	At4g01100	ADNT1 (ADENINE NUCLEOTIDE TRANSPORTER 1)	O.I.	H.G.	S.X.	Please select
0.81	94.3	0.99	Zm.8973.1.S1_a_at	CF058354	hypothetical protein LOC100191732	-	2e-2	At2g18770	signal recognition particle binding	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.99	Zm.3944.1.S1_at	M29411.1	opaque endosperm2	-	9e-1	At4g02640	BZO2H1	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.99	Zm.3845.2.A1_at	CA403952	hypothetical protein LOC100272900	-	2e-50	At3g15020	malate dehydrogenase (NAD), mitochondrial, putative	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.99	Zm.9641.1.A1_at	BM349151	-	-	1e-3	At5g10980	histone H3	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.1	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.3	91.7	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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