CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.10773.1.A1_at

Gene name hypothetical protein LOC100191227
Homology with Arabidopsis Similar to At1g73010: phosphatase (HF=1e+0)

Module size 6 genes

NF 0.32

%ile 30.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 61.3 0.88 Zm.10773.1.A1_at AY105086.1 hypothetical protein LOC100191227 - 1e+0 At1g73010 phosphatase O.I. H.G. S.X.
0.91 99.0 0.90 Zm.13485.1.S1_at AY108893.1 - - 3e-1 At5g16540 ZFN3 (ZINC FINGER NUCLEASE 3) O.I. H.G. S.X.
0.36 41.3 0.89 Zm.11731.1.A1_at BM380291 helix-loop-helix DNA-binding domain containing protein - 5e-9 At4g09180 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.
0.21 15.5 0.89 Zm.14827.1.S1_at AJ430635.1 m21 protein - 1e-1 At1g28200 FIP1 (FH INTERACTING PROTEIN 1) O.I. H.G. S.X.
0.20 14.2 0.90 Zm.17767.1.A1_at CK371577 hypothetical protein LOC100191424 - 4e-1 At2g14365 LCR84 (Low-molecular-weight cysteine-rich 84) O.I. H.G. S.X.
0.16 9.4 0.88 Zm.13661.1.A1_at AY107142.1 - - 2e+0 At4g25710 kelch repeat-containing F-box family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4 98.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3 98.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7 98.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3 97.4 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1 95.9 GSM320457 protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os01g0720400, orthologous to the query gene, Zm.10773.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.59 78.0 Os01g0720400 At1g73010 - HAD-superfamily subfamily IB hydrolase,hypothetical 1 protein 2e-6 At1g73010 phosphatase O.I. H.G. S.X.
0.44 58.1 Os03g0197000 At1g73010 - Conserved hypothetical protein 2e-1 At1g02405 proline-rich family protein O.I. H.G. S.X.
0.40 51.1 Os09g0438100 At1g73010 - Conserved hypothetical protein 1e-1 At1g07950 surfeit locus protein 5 family protein / SURF5 family protein O.I. H.G. S.X.
0.36 44.0 Os02g0700400 At1g73010 - Alternative oxidase AOX1 6e-4 At3g22370 AOX1A (ALTERNATIVE OXIDASE 1A) O.I. H.G. S.X.
0.32 36.3 Os05g0534400 At1g73010 - Calcineurin B-like protein 8 9e-3 At5g24270 SOS3 (SALT OVERLY SENSITIVE 3) O.I. H.G. S.X.
0.32 36.3 Os01g0281000 At1g73010 - Cyclin-like F-box domain containing protein 2e-17 At2g32560 F-box family protein O.I. H.G. S.X.
0.26 25.6 Os03g0176700 At1g73010 - Hypothetical protein 3e+0 At5g65220 ribosomal protein L29 family protein O.I. H.G. S.X.
0.26 25.6 Os05g0586600 At1g73010 - Plastid sigma factor SIG5 8e-1 At2g33820 MBAC1 O.I. H.G. S.X.
0.26 25.6 Os03g0574900 At1g73010 - K+ potassium transporter family protein 1e+0 At5g36805 - O.I. H.G. S.X.
0.26 25.6 Os01g0281100 At1g73010 - Conserved hypothetical protein 3e+0 At4g22110 alcohol dehydrogenase, putative O.I. H.G. S.X.
0.13 8.2 Os04g0541700 At1g73010 - Homeobox domain containing protein 4e-2 At2g46680 ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7) O.I. H.G. S.X.
0.13 8.2 Os04g0444800 At1g73010 - Cytochrome b-245, heavy chain family protein 7e-15 At5g49740 ATFRO7 (FERRIC REDUCTION OXIDASE 7) O.I. H.G. S.X.
0.12 7.2 Os04g0668800 At1g73010 - Putative thiol-disulphide oxidoreductase DCCfamily protein 1e-7 At5g50100 - O.I. H.G. S.X.
0.08 4.2 Os01g0898800 At1g73010 - Conserved hypothetical protein 4e-2 At5g07540 GRP16 (GLYCINE-RICH PROTEIN 16) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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