Co-expression analysis

Gene ID	Zm.10773.1.A1_at
Gene name	hypothetical protein LOC100191227
Homology with Arabidopsis	Similar to At1g73010: phosphatase (HF=1e+0)
Module size	6 genes
NF	0.32
%ile	30.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.48	61.3	0.88	Zm.10773.1.A1_at	AY105086.1	hypothetical protein LOC100191227	-	1e+0	At1g73010	phosphatase	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.90	Zm.13485.1.S1_at	AY108893.1	-	-	3e-1	At5g16540	ZFN3 (ZINC FINGER NUCLEASE 3)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.89	Zm.11731.1.A1_at	BM380291	helix-loop-helix DNA-binding domain containing protein	-	5e-9	At4g09180	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.89	Zm.14827.1.S1_at	AJ430635.1	m21 protein	-	1e-1	At1g28200	FIP1 (FH INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.90	Zm.17767.1.A1_at	CK371577	hypothetical protein LOC100191424	-	4e-1	At2g14365	LCR84 (Low-molecular-weight cysteine-rich 84)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.88	Zm.13661.1.A1_at	AY107142.1	-	-	2e+0	At4g25710	kelch repeat-containing F-box family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig12968_at, orthologous to the query gene, Zm.10773.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	Contig12968_at	At1g73010	-	-	3e-1	At3g56891	metal ion binding	O.I.	H.G.	S.X.	Please select
0.42	55.2	HS07I12u_x_at	At1g73010	-	-	3e+0	At3g15210	ERF4 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig1075_at	At1g73010	-	-	7e+0	At4g36500	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	42.6	Contig10759_at	At1g73010	-	-	7e-1	At5g15150	ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig600_at	At1g73010	-	-	1e-12	At3g10410	scpl49 (serine carboxypeptidase-like 49)	O.I.	H.G.	S.X.	Please select
0.32	40.3	X87690_s_at	At1g73010	m12 protein	-	1e-15	At4g26930	MYB97 (myb domain protein 97)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig22545_at	At1g73010	-	-	7e+0	At2g27315	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	37.0	Contig2152_at	At1g73010	-	-	5e-6	At2g01760	ARR14 (ARABIDOPSIS RESPONSE REGULATOR 14)	O.I.	H.G.	S.X.	Please select
0.29	35.5	Contig12336_at	At1g73010	-	-	8e-5	At3g22240	unknown protein	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig12084_at	At1g73010	-	-	6e-3	At4g21740	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	27.2	HVSMEc0014G01f_x_at	At1g73010	-	-	7e+0	Atmg00240	-	O.I.	H.G.	S.X.	Please select
0.20	21.1	Contig3052_at	At1g73010	-	-	2e-13	At4g31740	-	O.I.	H.G.	S.X.	Please select
0.19	19.6	Contig12979_s_at	At1g73010	-	-	9e-1	At1g72370	P40	O.I.	H.G.	S.X.	Please select
0.08	6.5	HW03F24u_at	At1g73010	-	-	3e+0	At5g09490	40S ribosomal protein S15 (RPS15B)	O.I.	H.G.	S.X.	Please select
0.02	1.8	HT12E22u_s_at	At1g73010	-	-	2e+0	At2g45695	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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