Co-expression analysis

Gene ID Zm.10665.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g03455: CDC25 (HF=1e+1)
Module size 6 genes
NF 0.22
%ile 16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7389.90.96Zm.10665.1.A1_atBQ538910--1e+1At5g03455CDC25O.I.H.G.S.X.
0.3131.60.97Zm.484.1.A1_atAF136827.1elongation factor 1 alpha-0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.2622.70.97ZmAffx.122.1.A1_atAI665696hypothetical protein LOC100217096-8e-1At1g23260MMZ1 (MMS ZWEI HOMOLOGUE 1)O.I.H.G.S.X.
0.2521.30.97Zm.15215.1.A1_atBM332652Hypothetical protein LOC100193843-1e+0At5g22870harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedO.I.H.G.S.X.
0.1710.60.97Zm.2236.1.S1_atBQ538247peroxiredoxin bcp-9e-9At3g26060ATPRX QO.I.H.G.S.X.
0.094.00.97Zm.326.1.S1_atAB042269.1response regulator 7-3e+0At5g41761unknown proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3641.30.97Zm.5012.1.A1_atCK849978auxin response factor 75-9e-1At3g45050unknown proteinO.I.H.G.S.X.
0.3641.30.97Zm.14455.1.S1_atCD446715hypothetical protein LOC100217268-5e-5At5g40490RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.2928.10.97Zm.2104.1.A1_atBM266401hypothetical protein LOC100279029-2e+0At3g62880ATOEP16-4O.I.H.G.S.X.
0.2724.60.94Zm.18091.1.A1_atBQ538837--7e-6At1g22430alcohol dehydrogenase, putativeO.I.H.G.S.X.
0.2724.60.96Zm.17330.1.S1_atCK369873--1e+0At2g37000TCP family transcription factor, putativeO.I.H.G.S.X.
0.2724.60.96Zm.8031.1.A1_atBQ539285--9e-15At1g08720EDR1 (ENHANCED DISEASE RESISTANCE 1)O.I.H.G.S.X.
0.2521.30.96Zm.17174.1.A1_atCO531239hypothetical protein LOC100273979-2e-6At1g24400LHT2 (LYSINE HISTIDINE TRANSPORTER 2)O.I.H.G.S.X.
0.2521.30.97Zm.12428.2.A1_atAY107621.1--4e+0At3g21000unknown proteinO.I.H.G.S.X.
0.2318.60.97Zm.17284.1.S1_atCO521050hypothetical protein LOC100217144-1e-2At3g60910catalytic/ methyltransferaseO.I.H.G.S.X.
0.2318.60.97Zm.17197.1.A1_atCO531814DNA binding protein-3e-3At3g51960bZIP family transcription factorO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.898.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.298.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.898.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.098.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.297.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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