Co-expression analysis

Gene ID	Zm.10665.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g03455: CDC25 (HF=1e+1)
Module size	6 genes
NF	0.22
%ile	16.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.73	89.9	0.96	Zm.10665.1.A1_at	BQ538910	-	-	1e+1	At5g03455	CDC25	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.484.1.A1_at	AF136827.1	elongation factor 1 alpha	-	0	At1g07920	elongation factor 1-alpha / EF-1-alpha	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	ZmAffx.122.1.A1_at	AI665696	hypothetical protein LOC100217096	-	8e-1	At1g23260	MMZ1 (MMS ZWEI HOMOLOGUE 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.15215.1.A1_at	BM332652	Hypothetical protein LOC100193843	-	1e+0	At5g22870	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	Zm.2236.1.S1_at	BQ538247	peroxiredoxin bcp	-	9e-9	At3g26060	ATPRX Q	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.97	Zm.326.1.S1_at	AB042269.1	response regulator 7	-	3e+0	At5g41761	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.8	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, Ta.7737.2.S1_at, orthologous to the query gene, Zm.10665.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.7737.2.S1_at	At5g03455	-	-	7e-2	At1g68630	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	25.5	Ta.1742.1.S1_at	At5g03455	-	-	7e+0	At2g27510	ATFD3 (ferredoxin 3)	O.I.	H.G.	S.X.	Please select
0.20	24.0	Ta.3888.1.S1_a_at	At5g03455	-	-	8e-5	At5g54430	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.9090.1.S1_at	At5g03455	-	-	2e+0	At2g30410	KIS (KIESEL)	O.I.	H.G.	S.X.	Please select
0.10	11.3	Ta.30784.1.S1_at	At5g03455	-	-	2e+0	At4g16240	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	Ta.14529.3.A1_x_at	At5g03455	-	-	1e+0	At1g29070	ribosomal protein L34 family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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