Co-expression analysis

Gene ID	Zm.10656.1.A1_at
Gene name	hypothetical protein LOC100216802
Homology with Arabidopsis	Similar to At4g25570: ACYB-2 (HF=3e+0)
Module size	10 genes
NF	0.49
%ile	62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	96.3	0.99	Zm.10656.1.A1_at	BQ538423	hypothetical protein LOC100216802	-	3e+0	At4g25570	ACYB-2	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.99	Zm.625.1.S1_at	BG841424	MAP kinase phosphatase	-	1e-1	At1g44020	DC1 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.99	Zm.8842.1.A1_at	BM075870	hypothetical protein LOC100193075	-	1e+0	At2g40670	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.99	Zm.2946.1.S1_at	CF384431	-	-	1e+0	At5g41450	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.99	Zm.7121.2.S1_at	AF457960.1	-	-	5e-6	At3g12120	FAD2 (FATTY ACID DESATURASE 2)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.15932.1.A1_at	AJ577238.1	beta3-glucuronyltransferase	-	8e-1	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.661.2.A1_at	AF290415.1	chloroplast RNA splicing1	-	6e-2	At3g18390	EMB1865 (embryo defective 1865)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.99	Zm.6614.1.A1_at	CO533019	coronatine-insensitive protein 1	-	1e+0	At2g26030	F-box family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.99	Zm.14137.2.S1_at	CA402353	hypothetical protein LOC100193311	-	2e-35	At1g77130	PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.99	Zm.2212.1.A1_at	AW313404	hypothetical protein LOC100276550	-	3e-2	At5g20910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.7	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.2	94.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage