Co-expression analysis

Gene ID	Zm.10640.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At1g15120: ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative (HF=2e-5)
Module size	7 genes
NF	0.18
%ile	13.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.90	Zm.10640.1.S1_at	AY107547.1	-	-	2e-5	At1g15120	ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.90	Zm.9903.1.A1_at	BM335103	hypothetical protein LOC100273348	-	3e+0	At1g63220	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.91	Zm.17762.1.S1_at	CK369807	hydrophobic protein LTI6B	-	4e-3	At3g05890	RCI2B (RARE-COLD-INDUCIBLE 2B)	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.90	Zm.9703.1.A1_at	BM348340	hypothetical protein LOC100191161 /// hypothetical protein LOC100272965	-	5e+0	Atcg01020	-	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.91	Zm.9567.1.S1_at	BM378205	-	-	5e-10	At5g10780	-	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.91	Zm.1666.1.S1_at	CF638202	Hypothetical protein LOC100191200	-	7e-1	At3g04640	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.90	Zm.11835.1.A1_at	BM381123	gastric triacylglycerol lipase	-	3e+0	At1g27890	CCR4-NOT transcription complex protein, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
16.2	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.4	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage