Co-expression analysis

Gene ID Zm.10593.1.A1_at
Gene name hypothetical protein LOC100194168
Homology with ArabidopsisSimilar to At3g55350: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.51
%ile 65.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.99Zm.10593.1.A1_atBM380000hypothetical protein LOC100194168-1e+0At3g55350unknown proteinO.I.H.G.S.X.
0.6785.80.99Zm.3964.1.A1_a_atAF205603.1ferric-chelate reductase (NADH)2-1e-17At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.5369.10.99ZmAffx.533.1.S1_atAI711769--8e-1At5g11790Ndr family proteinO.I.H.G.S.X.
0.5065.70.99Zm.13456.2.A1_atAY111230.1Hypothetical protein LOC100194201-5e+0At3g50520phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.3538.90.99ZmAffx.962.1.A1_atAI833777hypothetical protein LOC100275523-3e-22At1g64680unknown proteinO.I.H.G.S.X.
0.3233.40.99ZmAffx.1031.1.S1_atAI881675--2e-1At2g24490RPA2 (REPLICON PROTEIN A2)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7389.90.98Zm.2437.1.A1_atCK370472--1e-1At4g33730pathogenesis-related protein, putativeO.I.H.G.S.X.
0.7389.90.98Zm.1903.1.S1_atCD965960hypothetical protein LOC100274631-4e-4At2g4051040S ribosomal protein S26 (RPS26A)O.I.H.G.S.X.
0.6785.80.99Zm.1174.1.A1_atCA401542WNK6-1e-3At1g64630WNK10 (WITH NO LYSINE KINASE 10)O.I.H.G.S.X.
0.6077.80.98Zm.16959.2.A1_atCK347555hypothetical protein LOC100274593-1e-13At3g46230ATHSP17.4O.I.H.G.S.X.
0.5065.70.96Zm.2431.1.A1_atAW191394--5e+0At1g11655unknown proteinO.I.H.G.S.X.
0.5065.70.97Zm.8909.1.A1_atCF636488hypothetical protein LOC100275937 /// hypothetical protein LOC100278999-1e-1At5g36662-O.I.H.G.S.X.
0.5065.70.99ZmAffx.97.1.A1_atAI665446--1e-2At1g17790DNA-binding bromodomain-containing proteinO.I.H.G.S.X.
0.5065.70.99ZmAffx.1198.1.A1_atBE056195--2e-1At1g75040PR5 (PATHOGENESIS-RELATED GENE 5)O.I.H.G.S.X.
0.5065.70.99Zm.18012.1.A1_atCK827313--2e-3At5g48950thioesterase family proteinO.I.H.G.S.X.
0.4658.40.98Zm.13632.1.A1_atCO532913hypothetical protein LOC100191724-5e+0At5g20400oxidoreductase, 2OG-Fe(II) oxygenase family proteinO.I.H.G.S.X.
0.4658.40.99Zm.1459.1.S1_atCK368035cold acclimation protein COR413-PM1-2e-1At4g37220stress-responsive protein, putativeO.I.H.G.S.X.
0.4455.70.99Zm.4716.1.A1_atAI738149hypothetical protein LOC100193057-1e-1At4g37750ANT (AINTEGUMENTA)O.I.H.G.S.X.
0.4352.80.98Zm.13284.1.S1_atCA826798hypothetical protein LOC100280123-5e-9At1g27440GUT2O.I.H.G.S.X.
0.4251.30.98Zm.16255.1.A1_atCD446900--7e+0At4g22610protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.4048.50.96ZmAffx.1176.1.A1_atAW927389--8e-1At3g18250unknown proteinO.I.H.G.S.X.
0.4048.50.96Zm.9467.1.A1_atBM269106--1e+0At1g55950-O.I.H.G.S.X.
0.4048.50.97Zm.1593.1.A1_atAI001328pepsin A-6e-1At4g36460unknown proteinO.I.H.G.S.X.
0.4048.50.97Zm.3868.2.S1_atAY106390.1--2e-16At5g07070CIPK2 (CBL-INTERACTING PROTEIN KINASE 2)O.I.H.G.S.X.
0.4048.50.99Zm.17625.1.A1_atCF631845--4e-23At1g10200WLIM1O.I.H.G.S.X.
0.3844.20.99Zm.11586.1.A1_atBM379136--6e+0Atmg00280-O.I.H.G.S.X.
0.3641.30.97ZmAffx.1044.1.A1_atAI881789--3e-1At5g66800unknown proteinO.I.H.G.S.X.
0.3641.30.97Zm.4715.1.A1_atAI600987--6e+0At5g65660hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3641.30.98ZmAffx.540.1.A1_atAI711844tankyrase 1-2e-1At4g25400basix helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.3641.30.98Zm.2266.1.A1_s_atAW330883--5e+0At3g44940unknown proteinO.I.H.G.S.X.
0.3641.30.98Zm.93.1.A1_atBM331772TATA-binding protein1-6e-63At1g55520TBP2 (TATA BINDING PROTEIN 2)O.I.H.G.S.X.
0.3538.90.99Zm.6767.1.S1_atAY104126.1hypothetical protein LOC100216595-3e-28At1g52930brix domain-containing proteinO.I.H.G.S.X.
0.3336.00.98Zm.16763.2.S1_a_atBE051683hypothetical protein LOC100193074-1e-1At5g41570WRKY24O.I.H.G.S.X.
0.3233.40.97Zm.14039.2.S1_atAW179497gibberellin-regulated protein 1-2e+0At5g62860F-box family protein-relatedO.I.H.G.S.X.
0.3233.40.98ZmAffx.960.1.S1_atAI833639--3e+0At2g19640ASHR2 (ASH1-RELATED PROTEIN 2)O.I.H.G.S.X.
0.3131.60.96Zm.17238.1.S1_atCK371539--3e-2At3g02300regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.3029.80.97Zm.13965.1.S1_atCF050600hypothetical protein LOC100191681-2e-71At2g18020EMB2296 (embryo defective 2296)O.I.H.G.S.X.
0.2928.10.98Zm.19275.1.A1_atBM080650hypothetical protein LOC100191349-3e-1At3g12390nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeO.I.H.G.S.X.
0.2928.10.99Zm.17716.1.A1_a_atCK370089--4e+0At4g05010F-box family proteinO.I.H.G.S.X.
0.2928.10.99Zm.9948.1.A1_atCB3507883-N-debenzoyl-2-deoxytaxol N-benzoyltransferase-2e+0At1g54575unknown proteinO.I.H.G.S.X.
0.2828.10.98Zm.4230.1.S1_atCO523811--4e-5At1g17650GLYR2 (GLYOXYLATE REDUCTASE 2)O.I.H.G.S.X.
0.2828.10.98ZmAffx.589.1.A1_atAI715017--8e-1At5g53880unknown proteinO.I.H.G.S.X.
0.2724.60.97ZmAffx.739.1.A1_atAI740090hypothetical protein LOC100277548-8e-1At3g28070nodulin MtN21 family proteinO.I.H.G.S.X.
0.2724.60.98Zm.11919.1.A1_a_atCF630475hypothetical protein LOC100279890-3e-7At3g01015-O.I.H.G.S.X.
0.2724.60.98Zm.679.1.S1_atAY029320.1barley mlo defense gene homolog9-2e-10At5g53760MLO11 (MILDEW RESISTANCE LOCUS O 11)O.I.H.G.S.X.
0.2724.60.98ZmAffx.90.1.A1_atAI665360--3e+0At2g01755unknown proteinO.I.H.G.S.X.
0.2622.70.97Zm.10438.1.S1_atCA826544--1e+1At5g4004060S acidic ribosomal protein P2 (RPP2E)O.I.H.G.S.X.
0.2622.70.98Zm.2337.1.A1_atAW355868--4e+0At5g06660unknown proteinO.I.H.G.S.X.
0.2521.30.98Zm.2033.1.A1_atCO524092hypothetical protein LOC100274598-2e+0At1g19160-O.I.H.G.S.X.
0.2521.30.98Zm.12454.1.A1_atCF629114hypothetical protein LOC100273736-6e-3At1g10640polygalacturonaseO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.291.3GSM205369Mo17 13 DAP endosperm tissue biological replicate 2GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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