Co-expression analysis

Gene ID	Zm.10593.1.A1_at
Gene name	hypothetical protein LOC100194168
Homology with Arabidopsis	Similar to At3g55350: unknown protein (HF=1e+0)
Module size	6 genes
NF	0.51
%ile	65.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.99	Zm.10593.1.A1_at	BM380000	hypothetical protein LOC100194168	-	1e+0	At3g55350	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.99	Zm.3964.1.A1_a_at	AF205603.1	ferric-chelate reductase (NADH)2	-	1e-17	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.99	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.13456.2.A1_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.99	ZmAffx.962.1.A1_at	AI833777	hypothetical protein LOC100275523	-	3e-22	At1g64680	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.99	ZmAffx.1031.1.S1_at	AI881675	-	-	2e-1	At2g24490	RPA2 (REPLICON PROTEIN A2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.7	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2	91.3	GSM205369	Mo17 13 DAP endosperm tissue biological replicate 2	GSE8275	Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the grape gene, 1609651_at, orthologous to the query gene, Zm.10593.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1609651_at	At3g55350	hypothetical protein LOC100249569	-	9e-2	At1g54410	dehydrin family protein	O.I.	H.G.	S.X.	Please select
0.09	9.4	1614277_at	At3g55350	hypothetical protein LOC100246943	-	6e-8	At3g19420	ATPEN2 (ARABIDOPSIS THALIANA PTEN 2)	O.I.	H.G.	S.X.	Please select
0.07	7.8	1612264_at	At3g55350	-	-	6e-19	At5g52660	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.07	7.8	1615728_at	At3g55350	Aux/IAA protein	-	2e-20	At2g22670	IAA8	O.I.	H.G.	S.X.	Please select
0.02	3.2	1617460_s_at	At3g55350	hypothetical protein LOC100252195	-	3e-25	At4g34460	AGB1 (GTP BINDING PROTEIN BETA 1)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1618397_at	At3g55350	hypothetical protein LOC100262580	-	1e-56	At3g51130	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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