Co-expression analysis

Gene ID Zm.10593.1.A1_at
Gene name hypothetical protein LOC100194168
Homology with ArabidopsisSimilar to At3g55350: unknown protein (HF=1e+0)
Module size 6 genes
NF 0.51
%ile 65.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.99Zm.10593.1.A1_atBM380000hypothetical protein LOC100194168-1e+0At3g55350unknown proteinO.I.H.G.S.X.
0.6785.80.99Zm.3964.1.A1_a_atAF205603.1ferric-chelate reductase (NADH)2-1e-17At5g17770ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)O.I.H.G.S.X.
0.5369.10.99ZmAffx.533.1.S1_atAI711769--8e-1At5g11790Ndr family proteinO.I.H.G.S.X.
0.5065.70.99Zm.13456.2.A1_atAY111230.1Hypothetical protein LOC100194201-5e+0At3g50520phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.
0.3538.90.99ZmAffx.962.1.A1_atAI833777hypothetical protein LOC100275523-3e-22At1g64680unknown proteinO.I.H.G.S.X.
0.3233.40.99ZmAffx.1031.1.S1_atAI881675--2e-1At2g24490RPA2 (REPLICON PROTEIN A2)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.197.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.997.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.291.3GSM205369Mo17 13 DAP endosperm tissue biological replicate 2GSE8275Non-additive and imprinted gene expression in hybrid maize endosperm_13DAPLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os01g0838900, orthologous to the query gene, Zm.10593.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6787.2Os01g0838900At3g55350-Trp repressor/replication initiator domaincontaining protein7e-4At4g08520clathrin adaptor complex small chain family proteinO.I.H.G.S.X.
0.5371.3Os01g0974500At3g55350--2e-1At3g09410pectinacetylesterase family proteinO.I.H.G.S.X.
0.4458.1Os02g0290000At3g55350-TPR-like domain containing protein1e-1At1g17630pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.4051.1Os11g0531800At3g55350-Hypothetical protein3e-1At2g04810F-box family proteinO.I.H.G.S.X.
0.4051.1Os04g0673400At3g55350-Uracil-DNA glycosylase (EC 3.2.2.-) (UDG)3e-9At3g18630uracil DNA glycosylase family proteinO.I.H.G.S.X.
0.2117.9Os04g0683500At3g55350-Adenosine deaminase acting on tRNA 13e+0At5g63870PP7 (SERINE/THREONINE PHOSPHATASE 7)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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