CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.10593.1.A1_at

Gene name hypothetical protein LOC100194168
Homology with Arabidopsis Similar to At3g55350: unknown protein (HF=1e+0)

Module size 6 genes

NF 0.51

%ile 65.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 85.8 0.99 Zm.10593.1.A1_at BM380000 hypothetical protein LOC100194168 - 1e+0 At3g55350 unknown protein O.I. H.G. S.X.
0.67 85.8 0.99 Zm.3964.1.A1_a_at AF205603.1 ferric-chelate reductase (NADH)2 - 1e-17 At5g17770 ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1) O.I. H.G. S.X.
0.53 69.1 0.99 ZmAffx.533.1.S1_at AI711769 - - 8e-1 At5g11790 Ndr family protein O.I. H.G. S.X.
0.50 65.7 0.99 Zm.13456.2.A1_at AY111230.1 Hypothetical protein LOC100194201 - 5e+0 At3g50520 phosphoglycerate/bisphosphoglycerate mutase family protein O.I. H.G. S.X.
0.35 38.9 0.99 ZmAffx.962.1.A1_at AI833777 hypothetical protein LOC100275523 - 3e-22 At1g64680 unknown protein O.I. H.G. S.X.
0.32 33.4 0.99 ZmAffx.1031.1.S1_at AI881675 - - 2e-1 At2g24490 RPA2 (REPLICON PROTEIN A2) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.7 97.6 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7 97.6 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9 97.3 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2 96.9 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.2 91.3 GSM205369 Mo17 13 DAP endosperm tissue biological replicate 2 GSE8275 Non-additive and imprinted gene expression in hybrid maize endosperm_13DAP

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g55350, orthologous to the query gene, Zm.10593.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At3g55350 824701 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PMFOB O.I. H.G. S.X.
0.40 50.8 At5g16870 831550 aminoacyl-tRNA hydrolase F:aminoacyl-tRNA hydrolase activity;P:translation;C:unknown;OAMFPVB O.I. H.G. S.X.
0.31 33.8 At5g11010 830968 pre-mRNA cleavage complex-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFOPAB O.I. H.G. S.X.
0.29 30.3 At5g56280 835727 CSN6A one of two genes encoding subunit 6 of COP9 signalosome complex. Protein contains a MPR1p and PAD1p N-terminal (MPN) domain at the N-terminal region and belongs to the Mov34 superfamily. Mutant and antisense expression result in a number of developmental defects and in ubiquitin/proteasome-mediated protein degradation. O.I. H.G. S.X.
0.13 5.8 At5g17070 831570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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