Co-expression analysis

Gene ID	Zm.10479.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g13990: ATEXO70C2 (exocyst subunit EXO70 family protein C2) (HF=5e+0)
Module size	6 genes
NF	0.55
%ile	71.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.97	Zm.10479.1.S1_at	BQ486450	-	-	5e+0	At5g13990	ATEXO70C2 (exocyst subunit EXO70 family protein C2)	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.97	Zm.7620.1.A1_at	CF629426	hypothetical protein LOC100279978	-	2e-3	At2g24010	scpl23 (serine carboxypeptidase-like 23)	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.1158.1.A1_at	AY107067.1	-	-	4e-31	At5g10270	CDKC	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.97	Zm.6293.1.A1_at	CF038760	hypothetical protein LOC100216905	-	4e+0	At5g08400	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.7941.1.A1_at	BM080529	-	-	1e+0	At3g50040	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.0	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig6979_at, orthologous to the query gene, Zm.10479.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.3	Contig6979_at	At5g13990	-	-	2e-7	At5g46860	VAM3	O.I.	H.G.	S.X.	Please select
0.53	69.7	Contig7004_at	At5g13990	-	-	2e+0	At4g21320	HSA32 (HEAT-STRESS-ASSOCIATED 32)	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig7259_s_at	At5g13990	-	-	2e-5	At4g17640	CKB2	O.I.	H.G.	S.X.	Please select
0.16	15.3	Contig16694_at	At5g13990	-	-	2e-3	At1g58420	-	O.I.	H.G.	S.X.	Please select
0.15	14.1	Contig4411_at	At5g13990	-	-	3e-56	At4g18710	BIN2 (BRASSINOSTEROID-INSENSITIVE 2)	O.I.	H.G.	S.X.	Please select
0.12	10.4	Contig15982_at	At5g13990	-	-	3e-4	At3g19290	ABF4 (ABRE BINDING FACTOR 4)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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