Co-expression analysis

Gene ID Zm.1046.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g28610: - (HF=2e+0)
Module size 6 genes
NF 0.79
%ile 97.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.98Zm.1046.1.S1_atCF633990--2e+0At5g28610-O.I.H.G.S.X.
0.8395.60.98Zm.7728.1.A1_atBM079644--3e-3At2g33700protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.8395.60.98Zm.8175.1.A1_atBM382448--5e-6At2g39350ABC transporter family proteinO.I.H.G.S.X.
0.7792.10.98Zm.18115.1.A1_atCN845273ring domain containing protein-5e-1At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7389.90.98Zm.7868.1.S1_atCF630485hypothetical protein LOC100216779-4e-1At1g15390PDF1A (PEPTIDE DEFORMYLASE 1A)O.I.H.G.S.X.
0.5775.10.98Zm.6941.1.A1_atCF638044--4e-1At3g46770transcriptional factor B3 family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6381.10.97Zm.12656.1.S1_atCF010887--5e+0At5g07020proline-rich family proteinO.I.H.G.S.X.
0.6077.80.97Zm.5420.1.A1_atAI491495--5e-19At1g74880NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)O.I.H.G.S.X.
0.6077.80.98Zm.7569.1.A1_atBM347275--1e+0At1g69880ATH8 (thioredoxin H-type 8)O.I.H.G.S.X.
0.5775.10.96Zm.9943.1.A1_atBI674800cyclase-2e-1At1g44542cyclase family proteinO.I.H.G.S.X.
0.5775.10.97Zm.8954.2.S1_a_atAI947596--2e-20At4g39910ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3)O.I.H.G.S.X.
0.5674.40.97Zm.17322.1.A1_atCK370219--3e-84At3g52590UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)O.I.H.G.S.X.
0.5571.60.96Zm.16741.1.S1_atAY108913.1--8e-7At5g19050unknown proteinO.I.H.G.S.X.
0.5571.60.97Zm.18297.1.S1_atBG320462hypothetical protein LOC100216767-1e-27At3g54050fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putativeO.I.H.G.S.X.
0.5369.10.97Zm.17645.1.A1_atCK368768hypothetical protein LOC100193071-3e-10At4g38900bZIP proteinO.I.H.G.S.X.
0.5369.10.96Zm.5290.2.A1_atCF040249--5e+0At5g09240transcriptional coactivator p15 (PC4) family proteinO.I.H.G.S.X.
0.5369.10.97Zm.3066.1.A1_atM33103.1hypothetical protein LOC100280011-7e-5At1g20620CAT3 (CATALASE 3)O.I.H.G.S.X.
0.5267.30.96Zm.6401.2.S1_a_atBG266177hypothetical protein LOC100193788-1e-5At2g03800GEK1 (GEKO1)O.I.H.G.S.X.
0.5065.70.97Zm.17851.1.S1_atCF018132--5e+0At5g06270unknown proteinO.I.H.G.S.X.
0.4658.40.96Zm.13249.1.A1_atCF018842ESR1c1 protein-7e-2At1g29380-O.I.H.G.S.X.
0.4658.40.96Zm.3791.1.A1_atAW224984--8e-1At1g56030MIF4G domain-containing protein / U-box domain-containing proteinO.I.H.G.S.X.
0.4658.40.96Zm.1735.1.S1_atAY103687.1photosystem I reaction center subunit III-2e-10At1g31330PSAF (photosystem I subunit F)O.I.H.G.S.X.
0.4658.40.96Zm.18247.1.S1_atAY110411.1Hypothetical protein LOC100192004-2e-30At4g17190FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2)O.I.H.G.S.X.
0.4455.70.97Zm.3132.2.S1_atAY109250.1hypothetical protein LOC100273073-4e-7At3g02510regulator of chromosome condensation (RCC1) family proteinO.I.H.G.S.X.
0.4455.70.98Zm.3080.1.A1_atBM382308IAA13 - auxin-responsive Aux/IAA family member-3e-15At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)O.I.H.G.S.X.
0.4455.70.98Zm.954.1.S1_atAY107260.1hypothetical protein LOC100274537-1e+0At1g05055GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2)O.I.H.G.S.X.
0.4455.70.98Zm.16076.1.S1_a_atCF244160hypothetical protein LOC100191361-8e-4At5g63220unknown proteinO.I.H.G.S.X.
0.4455.70.96Zm.2538.1.A1_atBM336091hypothetical protein LOC100278766-4e+0At4g01935unknown proteinO.I.H.G.S.X.
0.4352.80.97Zm.16356.3.S1_atBM076035protein transport protein SEC61 gamma subunit-3e-17At4g24920protein transport protein SEC61 gamma subunit, putativeO.I.H.G.S.X.
0.4251.30.96Zm.4969.1.A1_atCD991522--6e+0At5g59230transcription factor-relatedO.I.H.G.S.X.
0.4048.50.96Zm.17305.1.A1_atCK369773hypothetical protein LOC100275875-1e+0At2g33690late embryogenesis abundant protein, putative / LEA protein, putativeO.I.H.G.S.X.
0.4048.50.96Zm.3797.1.S1_atBU097764pollen allergen Phl p 11-8e+0At5g48720XRI1 (X-RAY INDUCED TRANSCRIPT 1)O.I.H.G.S.X.
0.4048.50.96Zm.4613.1.A1_atCK826972--5e-1At1g73770unknown proteinO.I.H.G.S.X.
0.4048.50.97Zm.3755.1.A1_a_atAY104091.1derlin2-1 /// derlin2-2-8e-13At4g21810DER2.1 (DERLIN-2.1)O.I.H.G.S.X.
0.4048.50.97Zm.12309.1.S1_atCA403435ABA-induced protein-5e-1At5g29560calcium ion bindingO.I.H.G.S.X.
0.4048.50.97Zm.17711.1.A1_atCO518782--1e+0At4g25490CBF1 (C-REPEAT/DRE BINDING FACTOR 1)O.I.H.G.S.X.
0.4048.50.97Zm.3712.1.S1_atAW506785Hypothetical protein LOC100216583-6e-2At1g69430unknown proteinO.I.H.G.S.X.
0.3945.60.95Zm.13762.1.S1_atCO519853hypothetical protein LOC100193836-7e-16At4g26470calcium ion bindingO.I.H.G.S.X.
0.3945.60.96Zm.4187.1.S1_atAY105088.1--5e-1At5g45350proline-rich family proteinO.I.H.G.S.X.
0.3844.20.96Zm.3504.1.A1_atBM073847chloroplast ribonuclease III domain protein-2e-2At4g37510ribonuclease III family proteinO.I.H.G.S.X.
0.3742.30.95Zm.703.1.A1_atAY111840.1--1e-1At1g18730NDF6 (NDH DEPENDENT FLOW 6)O.I.H.G.S.X.
0.3742.30.96Zm.3883.1.S1_atAY105500.1beta-amylase-2e-1At4g17090CT-BMY (CHLOROPLAST BETA-AMYLASE)O.I.H.G.S.X.
0.3641.30.96ZmAffx.761.1.S1_atAI746033--8e+0At5g50840-O.I.H.G.S.X.
0.3641.30.96Zm.17167.1.A1_a_atCK827572hypothetical protein LOC100276673-6e-1At4g01895systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedO.I.H.G.S.X.
0.3641.30.96Zm.16356.2.A1_atBQ487089--2e-1At1g67590remorin family proteinO.I.H.G.S.X.
0.3641.30.96ZmAffx.1193.1.A1_atBE025345--3e+0At3g13140hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3641.30.97Zm.4850.1.A1_atAI770417--5e-2At5g65220ribosomal protein L29 family proteinO.I.H.G.S.X.
0.3641.30.97Zm.16102.1.A1_atCF244374--8e-9At5g48530unknown proteinO.I.H.G.S.X.
0.3641.30.97Zm.13672.1.A1_atAW355911hypothetical protein LOC100277946-2e-13At1g67550URE (UREASE)O.I.H.G.S.X.
0.3641.30.98Zm.4278.1.A1_atAI834022hypothetical protein LOC100279402-1e+1At5g05550transcription factorO.I.H.G.S.X.
0.3641.30.96Zm.3384.1.A1_x_atBI319306subtilisin-chymotrypsin inhibitor CI-1B /// subtilisin-chymotrypsin inhibitor CI-1B-9e+0At5g65687transporter-relatedO.I.H.G.S.X.
0.3641.30.97Zm.5218.1.A1_atAY111426.1--3e+0At2g30130ASL5O.I.H.G.S.X.
0.3538.90.96ZmAffx.577.1.S1_atAI714809--2e+0At1g80745unknown proteinO.I.H.G.S.X.
0.3538.90.97Zm.377.1.A1_atAI714846shaggy kinase homolog-2e-35At5g26751ATSK11O.I.H.G.S.X.
0.3437.20.96Zm.11813.1.A1_atBM380942hypothetical protein LOC100192995-5e+0At3g08980signal peptidase I family proteinO.I.H.G.S.X.
0.3336.00.96Zm.283.1.S1_atAY254104.1benzoxazinless1-5e-2At4g01220-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.999.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.098.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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