Co-expression analysis

Gene ID	Zm.1046.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At5g28610: - (HF=2e+0)
Module size	6 genes
NF	0.79
%ile	97.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.98	Zm.1046.1.S1_at	CF633990	-	-	2e+0	At5g28610	-	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	Zm.7728.1.A1_at	BM079644	-	-	3e-3	At2g33700	protein phosphatase 2C, putative / PP2C, putative	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.98	Zm.8175.1.A1_at	BM382448	-	-	5e-6	At2g39350	ABC transporter family protein	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.98	Zm.18115.1.A1_at	CN845273	ring domain containing protein	-	5e-1	At2g23780	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.7868.1.S1_at	CF630485	hypothetical protein LOC100216779	-	4e-1	At1g15390	PDF1A (PEPTIDE DEFORMYLASE 1A)	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.98	Zm.6941.1.A1_at	CF638044	-	-	4e-1	At3g46770	transcriptional factor B3 family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.9	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6	95.2	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.104482.1.S1_at, orthologous to the query gene, Zm.1046.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.104482.1.S1_at	At5g28610	-	-	4e-1	At5g05710	pleckstrin homology (PH) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.04	5.8	Ta.1965.1.S1_at	At5g28610	-	-	6e-3	At4g23330	eukaryotic translation initiation factor-related	O.I.	H.G.	S.X.	Please select
0.03	4.7	TaAffx.105475.1.S1_at	At5g28610	-	-	1e+0	At1g14620	DECOY (DECOY)	O.I.	H.G.	S.X.	Please select
0.02	3.6	TaAffx.83463.1.S1_at	At5g28610	-	-	1e+0	At4g36620	zinc finger (GATA type) family protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	Ta.3036.3.S1_x_at	At5g28610	-	-	2e-1	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.01	2.4	TaAffx.38158.4.S1_x_at	At5g28610	-	-	1e-3	At2g44330	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage