Co-expression analysis

Gene ID Zm.1046.1.S1_at
Gene name
Homology with ArabidopsisSimilar to At5g28610: - (HF=2e+0)
Module size 6 genes
NF 0.79
%ile 97.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.98Zm.1046.1.S1_atCF633990--2e+0At5g28610-O.I.H.G.S.X.
0.8395.60.98Zm.7728.1.A1_atBM079644--3e-3At2g33700protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.8395.60.98Zm.8175.1.A1_atBM382448--5e-6At2g39350ABC transporter family proteinO.I.H.G.S.X.
0.7792.10.98Zm.18115.1.A1_atCN845273ring domain containing protein-5e-1At2g23780zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.7389.90.98Zm.7868.1.S1_atCF630485hypothetical protein LOC100216779-4e-1At1g15390PDF1A (PEPTIDE DEFORMYLASE 1A)O.I.H.G.S.X.
0.5775.10.98Zm.6941.1.A1_atCF638044--4e-1At3g46770transcriptional factor B3 family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.999.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.098.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.998.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.498.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.695.2GSM320460protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os06g0711900, orthologous to the query gene, Zm.1046.1.S1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6987.9Os06g0711900At5g28610-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein5e-2At2g43570chitinase, putativeO.I.H.G.S.X.
0.5371.3Os01g0652000At5g28610--1e-3At4g18570proline-rich family proteinO.I.H.G.S.X.
0.5269.6Os11g0456000At5g28610-Rapid ALkalinization Factor family protein5e-3At1g58420-O.I.H.G.S.X.
0.5168.7Os01g0753800At5g28610-Conserved hypothetical protein3e+0At5g47640NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2)O.I.H.G.S.X.
0.4660.9Os03g0135200At5g28610-Glutathione S-transferase GST 9 (EC 2.5.1.18)2e+0At4g10090unknown proteinO.I.H.G.S.X.
0.4458.1Os03g0134900At5g28610-Glutathione S-transferase GSTF14 (Fragment)3e+0At3g62030peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4)O.I.H.G.S.X.
0.4458.1Os03g0135100At5g28610-Glutathione S-transferase GSTF155e-1At1g02540unknown proteinO.I.H.G.S.X.
0.4355.4Os11g0150400At5g28610-Conserved hypothetical protein4e-1At5g55570unknown proteinO.I.H.G.S.X.
0.4051.1Os01g0814100At5g28610-Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein5e-1At2g14170ALDH6B2O.I.H.G.S.X.
0.3948.3Os10g0543800At5g28610-Glutathione S-transferase6e-1At5g25940early nodulin-relatedO.I.H.G.S.X.
0.3745.0Os07g0166700At5g28610-Protein kinase domain containing protein4e-1At1g09483unknown proteinO.I.H.G.S.X.
0.3745.0Os03g0186900At5g28610-Peptidase A1, pepsin family protein9e-7At1g09750chloroplast nucleoid DNA-binding protein-relatedO.I.H.G.S.X.
0.3745.0Os07g0565800At5g28610-Conserved hypothetical protein2e+0At3g25577unknown proteinO.I.H.G.S.X.
0.3440.0Os09g0450600At5g28610-TB2/DP1 and HVA22 related protein family protein4e+0At3g57870SCE1 (SUMO CONJUGATION ENZYME 1)O.I.H.G.S.X.
0.3032.7Os05g0363500At5g28610-ARM repeat fold domain containing protein2e+0At3g23245unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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