CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.1046.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g28610: - (HF=2e+0)

Module size 6 genes

NF 0.79

%ile 97.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.8 0.98 Zm.1046.1.S1_at CF633990 - - 2e+0 At5g28610 - O.I. H.G. S.X.
0.83 95.6 0.98 Zm.7728.1.A1_at BM079644 - - 3e-3 At2g33700 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.83 95.6 0.98 Zm.8175.1.A1_at BM382448 - - 5e-6 At2g39350 ABC transporter family protein O.I. H.G. S.X.
0.77 92.1 0.98 Zm.18115.1.A1_at CN845273 ring domain containing protein - 5e-1 At2g23780 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.73 89.9 0.98 Zm.7868.1.S1_at CF630485 hypothetical protein LOC100216779 - 4e-1 At1g15390 PDF1A (PEPTIDE DEFORMYLASE 1A) O.I. H.G. S.X.
0.57 75.1 0.98 Zm.6941.1.A1_at CF638044 - - 4e-1 At3g46770 transcriptional factor B3 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.9 99.0 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9 98.7 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7 98.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1 98.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6 95.2 GSM320460 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the rice gene, Os06g0711900, orthologous to the query gene, Zm.1046.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 Os06g0711900 At5g28610 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 5e-2 At2g43570 chitinase, putative O.I. H.G. S.X.
0.53 71.3 Os01g0652000 At5g28610 - - 1e-3 At4g18570 proline-rich family protein O.I. H.G. S.X.
0.52 69.6 Os11g0456000 At5g28610 - Rapid ALkalinization Factor family protein 5e-3 At1g58420 - O.I. H.G. S.X.
0.51 68.7 Os01g0753800 At5g28610 - Conserved hypothetical protein 3e+0 At5g47640 NF-YB2 (NUCLEAR FACTOR Y, SUBUNIT B2) O.I. H.G. S.X.
0.46 60.9 Os03g0135200 At5g28610 - Glutathione S-transferase GST 9 (EC 2.5.1.18) 2e+0 At4g10090 unknown protein O.I. H.G. S.X.
0.44 58.1 Os03g0134900 At5g28610 - Glutathione S-transferase GSTF14 (Fragment) 3e+0 At3g62030 peptidyl-prolyl cis-trans isomerase, chloroplast / cyclophilin / rotamase / cyclosporin A-binding protein (ROC4) O.I. H.G. S.X.
0.44 58.1 Os03g0135100 At5g28610 - Glutathione S-transferase GSTF15 5e-1 At1g02540 unknown protein O.I. H.G. S.X.
0.43 55.4 Os11g0150400 At5g28610 - Conserved hypothetical protein 4e-1 At5g55570 unknown protein O.I. H.G. S.X.
0.40 51.1 Os01g0814100 At5g28610 - Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein 5e-1 At2g14170 ALDH6B2 O.I. H.G. S.X.
0.39 48.3 Os10g0543800 At5g28610 - Glutathione S-transferase 6e-1 At5g25940 early nodulin-related O.I. H.G. S.X.
0.37 45.0 Os07g0166700 At5g28610 - Protein kinase domain containing protein 4e-1 At1g09483 unknown protein O.I. H.G. S.X.
0.37 45.0 Os03g0186900 At5g28610 - Peptidase A1, pepsin family protein 9e-7 At1g09750 chloroplast nucleoid DNA-binding protein-related O.I. H.G. S.X.
0.37 45.0 Os07g0565800 At5g28610 - Conserved hypothetical protein 2e+0 At3g25577 unknown protein O.I. H.G. S.X.
0.34 40.0 Os09g0450600 At5g28610 - TB2/DP1 and HVA22 related protein family protein 4e+0 At3g57870 SCE1 (SUMO CONJUGATION ENZYME 1) O.I. H.G. S.X.
0.30 32.7 Os05g0363500 At5g28610 - ARM repeat fold domain containing protein 2e+0 At3g23245 unknown protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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