CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.1046.1.S1_at

Gene name
Homology with Arabidopsis Similar to At5g28610: - (HF=2e+0)

Module size 6 genes

NF 0.79

%ile 97.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.8 0.98 Zm.1046.1.S1_at CF633990 - - 2e+0 At5g28610 - O.I. H.G. S.X.
0.83 95.6 0.98 Zm.7728.1.A1_at BM079644 - - 3e-3 At2g33700 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.83 95.6 0.98 Zm.8175.1.A1_at BM382448 - - 5e-6 At2g39350 ABC transporter family protein O.I. H.G. S.X.
0.77 92.1 0.98 Zm.18115.1.A1_at CN845273 ring domain containing protein - 5e-1 At2g23780 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.73 89.9 0.98 Zm.7868.1.S1_at CF630485 hypothetical protein LOC100216779 - 4e-1 At1g15390 PDF1A (PEPTIDE DEFORMYLASE 1A) O.I. H.G. S.X.
0.57 75.1 0.98 Zm.6941.1.A1_at CF638044 - - 4e-1 At3g46770 transcriptional factor B3 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.9 99.0 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0 98.8 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9 98.7 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7 98.7 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1 98.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9 98.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5 98.6 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4 98.4 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.6 95.2 GSM320460 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g28610, orthologous to the query gene, Zm.1046.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g28610 832960 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB O.I. H.G. S.X.
0.50 65.3 At5g28630 832966 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. H.G. S.X.
0.43 55.3 At1g05575 837061 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. H.G. S.X.
0.43 55.3 At3g28580 822488 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to abscisic acid stimulus;C:endoplasmic reticulum;OMBFPAV O.I. H.G. S.X.
0.42 53.9 At3g18710 821402 PUB29 (PLANT U-BOX 29) Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. O.I. H.G. S.X.
0.40 50.8 At3g10930 820264 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. H.G. S.X.
0.31 33.8 At3g02840 821225 immediate-early fungal elicitor family protein F:binding;P:response to other organism, response to ozone;C:unknown;PO O.I. H.G. S.X.
0.28 30.3 At5g58680 835982 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MPOFB O.I. H.G. S.X.
0.18 11.4 At2g35710 818140 glycogenin glucosyltransferase (glycogenin)-related F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:endomembrane system;PMFOBV O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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