Co-expression analysis

Gene ID Zm.10409.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g23165: LCR42 (Low-molecular-weight cysteine-rich 42) (HF=2e+0)
Module size 10 genes
NF 0.45
%ile 53.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6481.70.96Zm.10409.1.A1_atBQ539201--2e+0At3g23165LCR42 (Low-molecular-weight cysteine-rich 42)O.I.H.G.S.X.
0.7188.20.97Zm.13886.1.S1_x_atAF099412.1R2R3MYB-domain protein-6e-2At5g62470MYB96 (myb domain protein 96)O.I.H.G.S.X.
0.5369.10.97Zm.3745.1.A1_atCF630213--2e-10At4g14950unknown proteinO.I.H.G.S.X.
0.5267.30.98Zm.1996.1.S1_atCK347826hypothetical protein LOC100276029-6e-4At1g47420-O.I.H.G.S.X.
0.4455.70.97Zm.4859.1.A1_atCO518546hypothetical protein LOC100193750-1e-13At5g13840FZR3 (FIZZY-RELATED 3)O.I.H.G.S.X.
0.3844.20.98Zm.14596.1.S1_atCD441249QM protein-6e-47At1g14320SAC52 (SUPPRESSOR OF ACAULIS 52)O.I.H.G.S.X.
0.3336.00.98Zm.3478.1.S1_a_atAY124703.1sucrose synthase2-4e-47At5g49190SUS2 (SUCROSE SYNTHASE 2)O.I.H.G.S.X.
0.3233.40.98Zm.4380.1.A1_atAY105814.1Hypothetical protein LOC100193145-5e-10At2g29200APUM1 (Arabidopsis Pumilio 1)O.I.H.G.S.X.
0.3131.60.97Zm.5474.1.S1_atCO531804hypothetical protein LOC100194401-2e-3At4g11450unknown proteinO.I.H.G.S.X.
0.2724.60.97Zm.1119.1.A1_atBE510368--1e-2At1g78922unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
6.797.6GSM253278ZM_8d_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.597.1GSM253279ZM_8d_SG200_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
5.396.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.096.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320466protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.296.0GSM253282ZM_8d_SG200_3Alu_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
4.195.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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