CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.10375.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g35360: ubiquitin family protein (HF=2e-17)

Module size 6 genes

NF 0.36

%ile 37.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.8 0.98 Zm.10375.1.S1_at BQ703821 - - 2e-17 At2g35360 ubiquitin family protein O.I. H.G. S.X.
0.67 85.8 0.98 Zm.9361.1.A1_at BM349541 - - 5e+0 At4g09580 - O.I. H.G. S.X.
0.50 65.7 0.99 Zm.8911.1.A1_at BM350783 - - 4e-2 At5g23540 26S proteasome regulatory subunit, putative O.I. H.G. S.X.
0.33 36.0 0.98 Zm.15314.1.S1_at CF972544 - - 1e-11 At3g06080 unknown protein O.I. H.G. S.X.
0.27 24.6 0.99 Zm.2269.1.S1_at CF631922 - - 1e-7 At5g51820 PGM (PHOSPHOGLUCOMUTASE) O.I. H.G. S.X.
0.13 6.8 0.98 Zm.4183.1.A1_at AI857198 - - 4e-1 At4g03113 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.46	58.4	0.97	Zm.2825.4.A1_at	CF011665	hypothetical protein LOC100192808	-	6e-41	At1g22450	COX6B (CYTOCHROME C OXIDASE 6B)	O.I.	H.G.	S.X.
0.44	55.7	0.96	Zm.6489.1.A1_at	AI692084	-	-	7e-7	At5g58787	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.44	55.7	0.98	Zm.12666.2.S1_at	AY536126.1	meg6 protein	-	4e-2	At1g60650	glycine-rich RNA-binding protein, putative	O.I.	H.G.	S.X.
0.43	52.8	0.98	Zm.12641.1.S1_at	BU097542	glucan endo-1,3-beta-glucosidase	-	9e-3	At3g55430	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	O.I.	H.G.	S.X.
0.40	48.5	0.96	Zm.1621.1.S1_at	AY107628.1	hypothetical protein LOC100193676	-	2e-6	At4g25640	MATE efflux family protein	O.I.	H.G.	S.X.
0.40	48.5	0.97	Zm.13315.1.S1_at	CA827618	pairing protein meu13-like	-	9e-15	At1g13330	-	O.I.	H.G.	S.X.
0.40	48.5	0.97	Zm.2817.2.A1_at	CB350638	hypothetical protein LOC100277525	-	7e+0	At5g66040	STR16 (SULFURTRANSFERASE PROTEIN 16)	O.I.	H.G.	S.X.
0.34	37.2	0.95	Zm.6045.3.S1_at	CO525120	AN14	-	2e-13	At1g51200	zinc finger (AN1-like) family protein	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.5526.1.S1_at	BM378638	-	-	3e-6	At2g20580	RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)	O.I.	H.G.	S.X.
0.32	33.4	0.96	Zm.11530.2.A1_at	BM332875	-	-	1e+0	At3g27380	SDH2-1	O.I.	H.G.	S.X.
0.32	33.4	0.96	Zm.13713.1.A1_at	AY106520.1	hypothetical protein LOC100193720	-	2e-24	At4g39200	40S ribosomal protein S25 (RPS25E)	O.I.	H.G.	S.X.
0.31	31.6	0.97	Zm.3313.2.A1_x_at	BM072909	-	-	4e+0	At2g27250	CLV3 (CLAVATA3)	O.I.	H.G.	S.X.
0.31	31.6	0.97	Zm.6709.1.A1_at	AI391870	hypothetical protein LOC100280423	-	4e-1	At1g77100	peroxidase, putative	O.I.	H.G.	S.X.
0.30	29.8	0.97	Zm.4319.1.A1_at	AI855081	hypothetical protein LOC100191231	-	3e+0	At2g31560	unknown protein	O.I.	H.G.	S.X.
0.29	28.1	0.96	Zm.9554.1.A1_at	BM267111	hypothetical protein LOC100280419	-	5e+0	At3g53850	-	O.I.	H.G.	S.X.
0.29	28.1	0.97	Zm.13479.1.A1_at	AY108945.1	inositol monophosphatase 3	-	6e-4	At3g02870	VTC4	O.I.	H.G.	S.X.
0.29	28.1	0.98	ZmAffx.1193.1.S1_at	BE025345	-	-	3e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.28	28.1	0.97	Zm.10081.2.A1_at	BM378463	hypothetical protein LOC100277294	-	2e-6	At2g45260	unknown protein	O.I.	H.G.	S.X.
0.26	22.7	0.98	Zm.13252.1.S1_at	U50816.1	-	-	6e-1	At4g34730	ribosome-binding factor A family protein	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.7 98.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9 96.7 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8 96.6 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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