Co-expression analysis

Gene ID	Zm.10375.1.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g35360: ubiquitin family protein (HF=2e-17)
Module size	6 genes
NF	0.36
%ile	37.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.98	Zm.10375.1.S1_at	BQ703821	-	-	2e-17	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.9361.1.A1_at	BM349541	-	-	5e+0	At4g09580	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.99	Zm.8911.1.A1_at	BM350783	-	-	4e-2	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.98	Zm.15314.1.S1_at	CF972544	-	-	1e-11	At3g06080	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.99	Zm.2269.1.S1_at	CF631922	-	-	1e-7	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.98	Zm.4183.1.A1_at	AI857198	-	-	4e-1	At4g03113	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.7	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

A co-expression module including the wheat gene, Ta.3373.1.S1_at, orthologous to the query gene, Zm.10375.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	Ta.3373.1.S1_at	At2g35360	-	-	8e-4	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.26222.1.S1_s_at	At2g35360	-	-	7e+0	At4g26055	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	14.6	Ta.21959.1.S1_at	At2g35360	-	-	7e-23	At4g31750	WIN2 (HOPW1-1-INTERACTING 2)	O.I.	H.G.	S.X.	Please select
0.09	10.4	Ta.6937.1.S1_at	At2g35360	-	-	2e+0	At5g47080	CKB1	O.I.	H.G.	S.X.	Please select
0.06	7.6	Ta.1058.2.S1_at	At2g35360	S-adenosylmethionine decarboxylase precursor	-	3e-5	At3g02470	SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE)	O.I.	H.G.	S.X.	Please select
0.05	6.7	Ta.1342.1.S1_s_at	At2g35360	-	-	6e-9	At2g23090	unknown protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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