CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.10375.1.S1_at

Gene name
Homology with Arabidopsis Similar to At2g35360: ubiquitin family protein (HF=2e-17)

Module size 6 genes

NF 0.36

%ile 37.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.8 0.98 Zm.10375.1.S1_at BQ703821 - - 2e-17 At2g35360 ubiquitin family protein O.I. H.G. S.X.
0.67 85.8 0.98 Zm.9361.1.A1_at BM349541 - - 5e+0 At4g09580 - O.I. H.G. S.X.
0.50 65.7 0.99 Zm.8911.1.A1_at BM350783 - - 4e-2 At5g23540 26S proteasome regulatory subunit, putative O.I. H.G. S.X.
0.33 36.0 0.98 Zm.15314.1.S1_at CF972544 - - 1e-11 At3g06080 unknown protein O.I. H.G. S.X.
0.27 24.6 0.99 Zm.2269.1.S1_at CF631922 - - 1e-7 At5g51820 PGM (PHOSPHOGLUCOMUTASE) O.I. H.G. S.X.
0.13 6.8 0.98 Zm.4183.1.A1_at AI857198 - - 4e-1 At4g03113 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.7 98.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4 98.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1 98.6 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1 97.4 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3 96.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9 96.7 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8 96.6 GSM375788 Deep-sowing 10d treatment Control, biological rep1 GSE15048 Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

A co-expression module including the rice gene, Os09g0573100, orthologous to the query gene, Zm.10375.1.S1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.70 88.4 Os09g0573100 At2g35360 - Ubiquitin domain containing protein 5e-2 At5g22390 unknown protein O.I. H.G. S.X.
0.37 45.0 Os10g0142900 At2g35360 - Conserved hypothetical protein 2e-2 At2g24290 unknown protein O.I. H.G. S.X.
0.32 36.3 Os02g0536400 At2g35360 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e+0 At3g47295 unknown protein O.I. H.G. S.X.
0.32 36.3 Os11g0124300 At2g35360 - GRAS transcription factor family protein 3e-5 At3g54220 SCR (SCARECROW) O.I. H.G. S.X.
0.30 32.7 Os02g0159400 At2g35360 - Hypothetical protein 8e-2 At3g46666 unknown protein O.I. H.G. S.X.
0.26 25.6 Os02g0109900 At2g35360 - Conserved hypothetical protein 9e-1 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.26 25.6 Os04g0682600 At2g35360 - Integrase, catalytic region domain containingprotein 2e-1 At5g15853 unknown protein O.I. H.G. S.X.
0.24 22.4 Os03g0555600 At2g35360 - - 5e+0 At4g26040 unknown protein O.I. H.G. S.X.
0.24 22.4 Os11g0106800 At2g35360 - Hypothetical protein 3e-1 At3g06780 glycine-rich protein O.I. H.G. S.X.
0.21 17.9 Os02g0456000 At2g35360 - - 4e-6 At4g01400 - O.I. H.G. S.X.
0.18 13.7 Os05g0112900 At2g35360 - TPR-like domain containing protein 3e-5 At2g44880 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.15 10.3 Os02g0748100 At2g35360 - RINT-1/TIP-1 family protein 3e-7 At3g47700 MAG2 (maigo2) O.I. H.G. S.X.
0.15 10.3 Os07g0645700 At2g35360 - Conserved hypothetical protein 4e-1 At4g37710 VQ motif-containing protein O.I. H.G. S.X.
0.15 10.3 Os04g0395500 At2g35360 - Conserved hypothetical protein 8e-2 At5g58782 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative O.I. H.G. S.X.
0.14 9.3 Os04g0488200 At2g35360 - TPR-like domain containing protein 2e-5 At2g03880 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.12 7.2 Os11g0106000 At2g35360 - Hypothetical protein 5e-2 At3g60490 AP2 domain-containing transcription factor TINY, putative O.I. H.G. S.X.
0.07 3.7 Os08g0162200 At2g35360 - TPR-like domain containing protein 7e-2 At3g46790 CRR2 (CHLORORESPIRATORY REDUCTION 2) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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