Co-expression analysis

Gene ID	Zm.10209.1.A1_at
Gene name	hypothetical protein LOC100191339
Homology with Arabidopsis	Similar to At4g11700: unknown protein (HF=5e-2)
Module size	7 genes
NF	0.18
%ile	12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.93	Zm.10209.1.A1_at	CD444477	hypothetical protein LOC100191339	-	5e-2	At4g11700	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.7167.1.A1_at	BU050804	membrane protein	-	4e-7	At1g27350	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.95	Zm.8402.1.A1_at	BM073969	-	-	2e-18	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.8926.2.S1_at	BM350553	Hypothetical protein LOC100192920	-	3e-1	At4g15150	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.6501.1.A1_at	CD441294	-	-	1e-1	At2g46640	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.95	Zm.4119.1.S1_at	AI854985	ATP binding protein	-	2e-4	At3g09010	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.95	Zm.18063.1.A1_at	CK986147	-	-	2e-1	At3g53611	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.1	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.417.3.A1_a_at, orthologous to the query gene, Zm.10209.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.2	PtpAffx.417.3.A1_a_at	At4g11700	cytochrome P450 /// cytochrome P450 /// hypothetical protein	-	3e-1	At3g44970	cytochrome P450 family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.77	94.9	PtpAffx.12059.1.S1_at	At4g11700	hypothetical protein	-	4e-31	At3g01420	DOX1	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.67	91.1	PtpAffx.56650.1.A1_s_at	At4g11700	cytochrome P450	-	3e-2	At5g36220	CYP81D1 (CYTOCHROME P450 81D1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.63	88.1	PtpAffx.208739.1.S1_s_at	At4g11700	hypothetical protein	-	2e-1	At1g66460	protein kinase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.61	87.0	PtpAffx.97764.1.S1_at	At4g11700	hypothetical protein	-	1e-38	At2g33120	SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.60	86.0	PtpAffx.25072.1.A1_at	At4g11700	hypothetical protein	-	7e-6	At1g14590	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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