Co-expression analysis

Gene ID	Zm.10209.1.A1_at
Gene name	hypothetical protein LOC100191339
Homology with Arabidopsis	Similar to At4g11700: unknown protein (HF=5e-2)
Module size	7 genes
NF	0.18
%ile	12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.93	Zm.10209.1.A1_at	CD444477	hypothetical protein LOC100191339	-	5e-2	At4g11700	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.7167.1.A1_at	BU050804	membrane protein	-	4e-7	At1g27350	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.95	Zm.8402.1.A1_at	BM073969	-	-	2e-18	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.8926.2.S1_at	BM350553	Hypothetical protein LOC100192920	-	3e-1	At4g15150	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.6501.1.A1_at	CD441294	-	-	1e-1	At2g46640	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.95	Zm.4119.1.S1_at	AI854985	ATP binding protein	-	2e-4	At3g09010	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.95	Zm.18063.1.A1_at	CK986147	-	-	2e-1	At3g53611	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.1	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the rice gene, Os07g0169600, orthologous to the query gene, Zm.10209.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.6	Os07g0169600	At4g11700	-	2OG-Fe(II) oxygenase domain containing protein	2e-1	At2g35640	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	Os02g0736400	At4g11700	-	Dihydroorotate dehydrogenase family protein	4e-24	At3g17810	dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.05	2.5	Os02g0273000	At4g11700	-	Uridine kinase-like protein	1e-59	At4g26510	ATP binding / kinase/ phosphotransferase, alcohol group as acceptor / uracil phosphoribosyltransferase	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.04	2.0	Os01g0314100	At4g11700	-	Catalytic domain of components of variousdehydrogenase complexes containing protein	3e-7	At3g06850	BCE2	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	0.5	Os03g0310400	At4g11700	-	Enoyl-CoA hydratase/isomerase domain containingprotein	1e-7	At4g16210	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.01	0.5	Os01g0711500	At4g11700	-	Calcineurin B (Fragment)	3e-2	At4g33000	CBL10 (CALCINEURIN B-LIKE 10)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.00	0.1	Os04g0674400	At4g11700	-	Protein of unknown function DUF689 family protein	2e-1	At3g57670	NTT (NO TRANSMITTING TRACT)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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