Co-expression analysis

Gene ID	Zm.10209.1.A1_at
Gene name	hypothetical protein LOC100191339
Homology with Arabidopsis	Similar to At4g11700: unknown protein (HF=5e-2)
Module size	7 genes
NF	0.18
%ile	12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.93	Zm.10209.1.A1_at	CD444477	hypothetical protein LOC100191339	-	5e-2	At4g11700	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.7167.1.A1_at	BU050804	membrane protein	-	4e-7	At1g27350	-	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.95	Zm.8402.1.A1_at	BM073969	-	-	2e-18	At1g30330	ARF6 (AUXIN RESPONSE FACTOR 6)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.8926.2.S1_at	BM350553	Hypothetical protein LOC100192920	-	3e-1	At4g15150	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	Zm.6501.1.A1_at	CD441294	-	-	1e-1	At2g46640	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.95	Zm.4119.1.S1_at	AI854985	ATP binding protein	-	2e-4	At3g09010	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.95	Zm.18063.1.A1_at	CK986147	-	-	2e-1	At3g53611	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
8.1	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202314	Mo17 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

A co-expression module including the barley gene, Contig11699_at, orthologous to the query gene, Zm.10209.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	84.7	Contig11699_at	At4g11700	-	-	2e-3	At5g05600	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.57	74.9	Contig26569_at	At4g11700	-	-	2e-5	At5g53045	-	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig16958_at	At4g11700	-	-	2e+0	At5g46020	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	49.5	Contig18644_at	At4g11700	-	-	1e+0	At4g13210	lyase/ pectate lyase	O.I.	H.G.	S.X.	Please select
0.34	43.6	Contig7511_at	At4g11700	-	-	3e+0	At4g05530	IBR1 (INDOLE-3-BUTYRIC ACID RESPONSE 1)	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig6421_at	At4g11700	-	-	2e+0	At2g34450	high mobility group (HMG1/2) family protein	O.I.	H.G.	S.X.	Please select
0.31	38.6	Contig13098_at	At4g11700	-	-	6e+0	At4g03580	-	O.I.	H.G.	S.X.	Please select
0.26	30.4	Contig15548_at	At4g11700	-	-	2e-7	At2g38000	chaperone protein dnaJ-related	O.I.	H.G.	S.X.	Please select
0.25	28.9	Contig8360_at	At4g11700	-	-	2e-23	At4g00370	ANTR2	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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