Co-expression analysis

Gene ID Zm.10209.1.A1_at
Gene name hypothetical protein LOC100191339
Homology with ArabidopsisSimilar to At4g11700: unknown protein (HF=5e-2)
Module size 7 genes
NF 0.18
%ile 12.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.93Zm.10209.1.A1_atCD444477hypothetical protein LOC100191339-5e-2At4g11700unknown proteinO.I.H.G.S.X.
0.3336.00.96Zm.7167.1.A1_atBU050804membrane protein-4e-7At1g27350-O.I.H.G.S.X.
0.2318.60.95Zm.8402.1.A1_atBM073969--2e-18At1g30330ARF6 (AUXIN RESPONSE FACTOR 6)O.I.H.G.S.X.
0.2014.20.95Zm.8926.2.S1_atBM350553Hypothetical protein LOC100192920-3e-1At4g15150glycine-rich proteinO.I.H.G.S.X.
0.147.70.95Zm.6501.1.A1_atCD441294--1e-1At2g46640unknown proteinO.I.H.G.S.X.
0.104.60.95Zm.4119.1.S1_atAI854985ATP binding protein-2e-4At3g09010protein kinase family proteinO.I.H.G.S.X.
0.104.60.95Zm.18063.1.A1_atCK986147--2e-1At3g53611unknown proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.698.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM202319Mo17 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
8.198.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.195.9GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM202314Mo17 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.C70000043_at, orthologous to the query gene, Zm.10209.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.8693.0PsAffx.C70000043_atAt4g11700--9e-1At2g19045RALFL13 (RALF-LIKE 13)O.I.H.G.S.X.
0.7589.5PsAffx.CL72Contig3_atAt4g11700--2e+0At4g30480tetratricopeptide repeat (TPR)-containing proteinO.I.H.G.S.X.
0.7489.2PsAffx.C191000027_atAt4g11700--7e-1At2g20420succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putativeO.I.H.G.S.X.
0.7288.1PsAffx.CL89Contig1_atAt4g11700--2e-1At1g59900AT-E1 ALPHAO.I.H.G.S.X.
0.6886.4PsAffx.CL377Contig1_atAt4g11700--8e+0At5g58640selenoprotein-relatedO.I.H.G.S.X.
0.6282.1PsAffx.CL72Contig2_atAt4g11700--3e-1At2g25190unknown proteinO.I.H.G.S.X.
0.6181.8PsAffx.CL584Contig1_s_atAt4g11700--4e+0At4g36500unknown proteinO.I.H.G.S.X.
0.6181.8PsAffx.CL82Contig1_atAt4g11700--4e-32At2g47170ARF1A1CO.I.H.G.S.X.
0.6080.7PsAffx.CL122Contig1_atAt4g11700--1e-1At3g56350superoxide dismutase (Mn), putative / manganese superoxide dismutase, putativeO.I.H.G.S.X.
0.5979.5PsAffx.CL243Contig1_atAt4g11700--4e-3At5g08530CI51 (51 kDa subunit of complex I)O.I.H.G.S.X.
0.5576.3PsAffx.CL2Contig13_s_atAt4g11700--3e+0At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.5273.1PsAffx.C151000027_s_atAt4g11700--4e+0At3g54120reticulon family protein (RTNLB12)O.I.H.G.S.X.
0.4968.3PsAffx.C1000027_s_atAt4g11700--3e-2At5g2354026S proteasome regulatory subunit, putativeO.I.H.G.S.X.
0.4968.3PsAffx.C32000008_atAt4g11700--1e+0At5g03750-O.I.H.G.S.X.
0.4463.3PsAffx.CL995Contig1_atAt4g11700--3e+0At3g01970WRKY45O.I.H.G.S.X.
0.4360.6PsAffx.CL111Contig1_atAt4g11700--9e+0At3g02000ROXY1O.I.H.G.S.X.
0.4158.1PsAffx.CL343Contig1_atAt4g11700--4e+0At3g54120reticulon family protein (RTNLB12)O.I.H.G.S.X.
0.4057.1PsAffx.CL262Contig1_atAt4g11700--3e+0At1g05330unknown proteinO.I.H.G.S.X.
0.3954.5PsAffx.CL56Contig1_atAt4g11700--6e-7At1g26480GRF12 (GENERAL REGULATORY FACTOR 12)O.I.H.G.S.X.
0.3853.3PsAffx.CL136Contig1_atAt4g11700--2e+0At1g28580GDSL-motif lipase, putativeO.I.H.G.S.X.
0.3751.7PsAffx.CL483Contig1_atAt4g11700--8e+0At4g01670unknown proteinO.I.H.G.S.X.
0.3650.8PsAffx.C65000037_s_atAt4g11700--9e-10At5g08680ATP synthase beta chain, mitochondrial, putativeO.I.H.G.S.X.
0.3650.8PsAffx.CL394Contig1_s_atAt4g11700--7e+0At4g31830unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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