Co-expression analysis

Gene ID	Zm.10202.1.A1_at
Gene name	farnesylated protein 1
Homology with Arabidopsis	Similar to At5g66110: metal ion binding (HF=3e-8)
Module size	7 genes
NF	0.10
%ile	6.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.98	Zm.10202.1.A1_at	AY112463.1	farnesylated protein 1	-	3e-8	At5g66110	metal ion binding	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.99	Zm.9795.1.A1_at	BM339139	-	-	4e-1	At5g44480	DUR (DEFECTIVE UGE IN ROOT)	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.99	ZmAffx.1151.1.A1_at	AW424605	anaphase-promoting complex subunit 10	-	3e+0	At3g43431	unknown protein	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.99	Zm.5628.1.A1_at	BM736222	hypothetical protein LOC100273072	-	2e-11	At4g30620	unknown protein	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.99	Zm.5278.1.A1_at	AI619074	tac7077	-	2e-7	At4g33140	unknown protein	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.99	Zm.13899.1.A1_at	AF099383.1	R2R3MYB-domain protein	-	6e-2	At4g37780	MYB87 (MYB DOMAIN PROTEIN 87)	O.I.	H.G.	S.X.	Please select
0.06	2.3	0.99	Zm.629.1.S1_at	AF127021.1	RNA polymerase T phage-like 1	-	9e-15	At1g68990	DNA-directed RNA polymerase, mitochondrial (RPOMT)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.0	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.0	96.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.4	96.2	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.9	95.7	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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