Co-expression analysis

Gene ID	Zm.1019.1.A1_at
Gene name	actin-depolymerizing factor 5
Homology with Arabidopsis	Similar to At2g16700: ADF5 (ACTIN DEPOLYMERIZING FACTOR 5) (HF=2e-19)
Module size	6 genes
NF	0.74
%ile	95.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.99	Zm.1019.1.A1_at	AW288674	actin-depolymerizing factor 5	-	2e-19	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.99	Zm.4027.1.S1_a_at	AY104092.1	hypothetical protein LOC100194227 /// hypothetical protein LOC100272558 /// endo-1,3;1,4-beta-D-glucanase	-	3e+0	At2g02030	F-box family protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.5491.1.A1_at	AY111486.1	-	-	1e-5	At2g37050	kinase	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.99	Zm.7368.1.S1_at	BM078103	ERF/AP2 domain containing transcription factor	-	5e-2	At3g57600	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.99	Zm.8925.1.A1_at	BM381305	-	-	2e+0	At5g50360	unknown protein	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.99	Zm.3241.1.A1_at	AW461143	translation initiation factor eIF-2B beta subunit	-	1e-10	At3g07300	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	O.I.	H.G.	S.X.	Please select

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.8	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
7.1	97.7	GSM375796	Deep-sowing 10d treatment GA3, biological rep2	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
6.6	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM375791	Deep-sowing 10d treatment GA3, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
3.7	95.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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