CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.10175.1.A1_at

Gene name hypothetical protein LOC100279966 /// pathogenesis-related protein 10
Homology with Arabidopsis Similar to At4g18692: unknown protein (HF=7e+0)

Module size 7 genes

NF 0.36

%ile 38.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.60 77.8 0.97 Zm.10175.1.A1_at BM379420 hypothetical protein LOC100279966 /// pathogenesis-related protein 10 - 7e+0 At4g18692 unknown protein O.I. H.G. S.X.
0.43 52.8 0.97 Zm.3773.1.S1_at AY110209.1 hypothetical protein LOC100193094 - 4e+0 At4g18620 - O.I. H.G. S.X.
0.43 52.8 0.97 Zm.2715.1.A1_at AW066985 - - 5e+0 At4g12990 unknown protein O.I. H.G. S.X.
0.35 38.9 0.97 Zm.5962.1.S1_a_at AY241545.1 glyoxalase I - 1e-17 At1g11840 ATGLX1 (GLYOXALASE I HOMOLOG) O.I. H.G. S.X.
0.29 28.1 0.97 Zm.13760.1.A1_at AY105817.1 - - 5e+0 At5g27280 zinc finger (DNL type) family protein O.I. H.G. S.X.
0.26 22.7 0.97 Zm.4860.2.A1_at AI770577 - - 3e+0 At2g34140 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.21 15.5 0.97 Zm.4823.1.A1_at CD999070 - - 4e-23 At1g76550 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.3 98.5 GSM320445 protocol: mRNA - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4 98.3 GSM320446 protocol: mRNA - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3 97.4 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3 97.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0 97.3 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6 97.1 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5 95.1 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1608603_at, orthologous to the query gene, Zm.10175.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.9 1608603_at At4g18692 hypothetical LOC100242108 - 3e-13 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) O.I. H.G. S.X.
0.44 64.1 1609100_s_at At4g18692 - - 4e+0 At5g06910 ATJ6 (Arabidopsis J-domain protein 6) O.I. H.G. S.X.
0.40 57.7 1610752_at At4g18692 hypothetical protein LOC100246682 - 1e-17 At3g18030 ATHAL3A O.I. H.G. S.X.
0.39 54.9 1607757_at At4g18692 - - 1e-3 At1g80670 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.35 48.5 1614452_at At4g18692 - - 6e-3 At2g05900 SDG11 (SET DOMAIN-CONTAINING PROTEIN 11) O.I. H.G. S.X.
0.35 48.5 1613377_at At4g18692 hypothetical protein LOC100243326 - 4e+0 At3g09350 armadillo/beta-catenin repeat family protein O.I. H.G. S.X.
0.34 46.8 1621430_at At4g18692 hypothetical protein LOC100249442 - 2e-30 At5g18940 Mo25 family protein O.I. H.G. S.X.
0.26 32.0 1613421_at At4g18692 hypothetical protein LOC100261079 - 2e-4 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) O.I. H.G. S.X.
0.26 32.0 1612852_at At4g18692 hypothetical protein LOC100243284 - 5e-76 At5g62890 permease, putative O.I. H.G. S.X.
0.24 28.7 1622171_at At4g18692 hypothetical protein LOC100244384 - 6e-28 At5g60670 60S ribosomal protein L12 (RPL12C) O.I. H.G. S.X.
0.20 22.4 1609143_at At4g18692 hypothetical protein LOC100254311 - 2e+1 At5g66240 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum

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