Co-expression analysis

Gene ID Zm.10175.1.A1_at
Gene name hypothetical protein LOC100279966 /// pathogenesis-related protein 10
Homology with ArabidopsisSimilar to At4g18692: unknown protein (HF=7e+0)
Module size 7 genes
NF 0.36
%ile 38.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6077.80.97Zm.10175.1.A1_atBM379420hypothetical protein LOC100279966 /// pathogenesis-related protein 10-7e+0At4g18692unknown proteinO.I.H.G.S.X.
0.4352.80.97Zm.3773.1.S1_atAY110209.1hypothetical protein LOC100193094-4e+0At4g18620-O.I.H.G.S.X.
0.4352.80.97Zm.2715.1.A1_atAW066985--5e+0At4g12990unknown proteinO.I.H.G.S.X.
0.3538.90.97Zm.5962.1.S1_a_atAY241545.1glyoxalase I-1e-17At1g11840ATGLX1 (GLYOXALASE I HOMOLOG)O.I.H.G.S.X.
0.2928.10.97Zm.13760.1.A1_atAY105817.1--5e+0At5g27280zinc finger (DNL type) family proteinO.I.H.G.S.X.
0.2622.70.97Zm.4860.2.A1_atAI770577--3e+0At2g34140Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.
0.2115.50.97Zm.4823.1.A1_atCD999070--4e-23At1g76550pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
11.398.5GSM320445protocol: mRNA - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320446protocol: mRNA - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.397.4GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.097.3GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.697.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.595.1GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.58548.1.S1_at, orthologous to the query gene, Zm.10175.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9398.7TaAffx.58548.1.S1_atAt4g18692--1e+1At5g03750-O.I.H.G.S.X.
0.2024.0TaAffx.110614.4.S1_atAt4g18692--3e-1At4g14630GLP9 (GERMIN-LIKE PROTEIN 9)O.I.H.G.S.X.
0.2024.0TaAffx.109595.2.S1_atAt4g18692--3e+0At1g79870oxidoreductase family proteinO.I.H.G.S.X.
0.1922.4TaAffx.65627.1.S1_atAt4g18692--5e+0At3g51380IQD20 (IQ-domain 20)O.I.H.G.S.X.
0.1821.0TaAffx.38529.1.A1_atAt4g18692--7e-1At4g26840SUMO1 (SMALL UBIQUITIN-LIKE MODIFIER 1)O.I.H.G.S.X.
0.0910.4TaAffx.51911.1.S1_atAt4g18692--3e+0At1g78300GRF2 (GENERAL REGULATORY FACTOR 2)O.I.H.G.S.X.
0.089.4Ta.17502.1.S1_atAt4g18692--3e-1At1g07950surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.078.6TaAffx.8301.1.S1_atAt4g18692--4e+0At1g47970unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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