Co-expression analysis

Gene ID	Zm.10175.1.A1_at
Gene name	hypothetical protein LOC100279966 /// pathogenesis-related protein 10
Homology with Arabidopsis	Similar to At4g18692: unknown protein (HF=7e+0)
Module size	7 genes
NF	0.36
%ile	38.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.60	77.8	0.97	Zm.10175.1.A1_at	BM379420	hypothetical protein LOC100279966 /// pathogenesis-related protein 10	-	7e+0	At4g18692	unknown protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.3773.1.S1_at	AY110209.1	hypothetical protein LOC100193094	-	4e+0	At4g18620	-	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.2715.1.A1_at	AW066985	-	-	5e+0	At4g12990	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.5962.1.S1_a_at	AY241545.1	glyoxalase I	-	1e-17	At1g11840	ATGLX1 (GLYOXALASE I HOMOLOG)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.13760.1.A1_at	AY105817.1	-	-	5e+0	At5g27280	zinc finger (DNL type) family protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.4860.2.A1_at	AI770577	-	-	3e+0	At2g34140	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.97	Zm.4823.1.A1_at	CD999070	-	-	4e-23	At1g76550	pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.3	98.5	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.76158.1.A1_at, orthologous to the query gene, Zm.10175.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.96	99.8	PtpAffx.76158.1.A1_at	At4g18692	-	-	4e+0	At5g63300	structural constituent of ribosome	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.32	55.2	Ptp.4835.1.S1_s_at	At4g18692	hypothetical protein	-	2e+0	At3g60220	ATL4	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.30	52.0	PtpAffx.37242.1.A1_at	At4g18692	hypothetical protein	-	4e-3	At3g18210	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.19	32.7	PtpAffx.918.1.S1_at	At4g18692	hypothetical protein	-	9e-28	At3g08510	ATPLC2 (PHOSPHOLIPASE C 2)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.18	30.8	Ptp.740.1.A1_at	At4g18692	-	-	4e-10	At4g16580	catalytic	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	Ptp.1086.1.A1_at	At4g18692	hypothetical protein	-	3e-5	At3g51120	DNA binding / nucleic acid binding / protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	PtpAffx.209195.1.S1_at	At4g18692	hypothetical protein	-	3e-29	At2g40980	-	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.13	21.6	Ptp.5384.1.S1_s_at	At4g18692	hypothetical protein	-	1e-1	At1g13550	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.06	9.8	PtpAffx.3754.2.S1_a_at	At4g18692	hypothetical protein	-	5e-34	At5g64270	splicing factor, putative	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.05	8.3	PtpAffx.27479.1.S1_at	At4g18692	hypothetical protein	-	7e-16	At1g26110	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	Ptp.7186.1.A1_s_at	At4g18692	hypothetical protein	-	2e-16	At2g28390	SAND family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.03	5.2	Ptp.4127.1.S1_s_at	At4g18692	hypothetical protein	-	4e-14	At3g19910	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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