Co-expression analysis

Gene ID	Zm.10170.2.S1_at
Gene name	Hypothetical protein LOC100194222
Homology with Arabidopsis	Similar to At5g56140: KH domain-containing protein (HF=3e-14)
Module size	6 genes
NF	0.56
%ile	73.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.91	Zm.10170.2.S1_at	BM078288	Hypothetical protein LOC100194222	-	3e-14	At5g56140	KH domain-containing protein	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.93	Zm.7543.1.A1_at	CD997722	hypothetical protein LOC100192002	-	4e-6	At1g66530	arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.93	Zm.9031.1.S1_at	CD441372	chloroplast Cu-Zn superoxide dismutase	-	8e-37	At2g28190	CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.2321.3.A1_a_at	BG841291	hypothetical protein LOC100191581 /// hypothetical protein LOC100274569	-	3e-9	At3g23050	IAA7 (INDOLE-3-ACETIC ACID 7)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.94	Zm.4027.2.A1_at	CO527250	hypothetical protein LOC100272558	-	6e-1	At1g49600	ATRBP47A (Arabidopsis thaliana RNA-binding protein 47a)	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.93	Zm.12357.1.A1_at	CB381715	hypothetical protein LOC100272551	-	3e-5	At5g02030	RPL (REPLUMLESS)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
27.5	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.8	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM253259	ZM_2d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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