Co-expression analysis

Gene ID	Zm.10077.1.A1_at
Gene name	glycine-rich protein
Homology with Arabidopsis	Similar to At3g07560: PEX13 (PEROXIN 13) (HF=7e-1)
Module size	7 genes
NF	0.41
%ile	46.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.97	Zm.10077.1.A1_at	CA399756	glycine-rich protein	-	7e-1	At3g07560	PEX13 (PEROXIN 13)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.12958.1.A1_at	CA402421	hypothetical protein LOC100217276	-	9e+0	At5g43245	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.19146.1.A1_at	CO533664	hypothetical protein LOC100193961	-	5e-1	At3g09050	unknown protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.13026.1.A1_a_at	AY111398.1	-	-	3e-1	At4g28930	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.9852.1.A1_at	BM381073	syntaxin 121	-	5e-3	At5g63740	zinc finger protein-related	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.97	Zm.36.2.S1_a_at	AF461049.1	delta zein structural10	-	9e-2	At2g45110	ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.19335.1.A1_at	CO521700	hypothetical protein LOC100279445	-	6e-4	At3g22440	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.6	97.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.2	96.9	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.6	96.4	GSM253278	ZM_8d_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
3.7	95.4	GSM253265	ZM_4d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.6	95.2	GSM253279	ZM_8d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.6	95.2	GSM253267	ZM_4d_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
3.4	94.9	GSM253277	ZM_8d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
3.3	94.7	GSM323172	Zm_SG200Dpep1_24hpi_III	GSE12892	Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
3.0	94.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9	93.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1621475_at, orthologous to the query gene, Zm.10077.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.69	88.3	1621475_at	At3g07560	-	-	4e+0	At1g73650	oxidoreductase, acting on the CH-CH group of donors	O.I.	H.G.	S.X.	Please select
0.55	77.3	1616694_at	At3g07560	hypothetical protein LOC100250410	-	2e+0	At3g29350	AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2)	O.I.	H.G.	S.X.	Please select
0.54	75.7	1615244_at	At3g07560	-	-	4e+0	At5g16390	CAC1 (CHLOROPLASTIC ACETYLCOENZYME A CARBOXYLASE 1)	O.I.	H.G.	S.X.	Please select
0.42	60.1	1616005_at	At3g07560	-	-	2e-2	At4g39730	lipid-associated family protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1621641_at	At3g07560	hypothetical protein LOC100256711	-	6e-2	At2g32020	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.39	54.9	1621003_at	At3g07560	similar to HB2 homeodomain protein	-	2e-1	At5g46700	TRN2 (TORNADO 2)	O.I.	H.G.	S.X.	Please select
0.39	54.9	1619231_at	At3g07560	hypothetical protein LOC100248953	-	2e+0	At3g60440	-	O.I.	H.G.	S.X.	Please select
0.39	54.9	1621880_s_at	At3g07560	hypothetical protein LOC100262668	-	3e+0	At5g14360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	1618875_s_at	At3g07560	hypothetical protein LOC100266914	-	1e-1	At1g51950	IAA18 (INDOLE-3-ACETIC ACID INDUCIBLE 18)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1618251_at	At3g07560	-	-	6e-9	At3g53430	60S ribosomal protein L12 (RPL12B)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1609703_at	At3g07560	similar to homeodomain protein ARBORKNOX1	-	2e-43	At1g62360	STM (SHOOT MERISTEMLESS)	O.I.	H.G.	S.X.	Please select
0.34	46.8	1615898_at	At3g07560	hypothetical protein LOC100247526	-	6e-2	At2g22100	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1617526_s_at	At3g07560	hypothetical protein LOC100250396	-	8e-1	At2g10920	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1612135_at	At3g07560	hypothetical protein LOC100265690	-	7e-11	At5g58960	GIL1 (GRAVITROPIC IN THE LIGHT)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1622725_at	At3g07560	hypothetical protein LOC100260366	-	7e+0	At5g28490	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1614094_at	At3g07560	hypothetical protein LOC100255834	-	6e-43	At4g08150	KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1615462_at	At3g07560	-	-	5e+0	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	O.I.	H.G.	S.X.	Please select
0.29	37.7	1620170_at	At3g07560	hypothetical protein LOC100246815	-	1e-4	At4g36920	AP2 (APETALA 2)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1616785_at	At3g07560	hypothetical protein LOC100259648	-	1e-32	At4g14560	IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE)	O.I.	H.G.	S.X.	Please select
0.25	30.5	1613945_at	At3g07560	hypothetical protein LOC100262668	-	5e-1	At5g40770	ATPHB3 (PROHIBITIN 3)	O.I.	H.G.	S.X.	Please select
0.22	25.6	1607122_at	At3g07560	hypothetical protein LOC100251438	-	3e+0	At4g33985	unknown protein	O.I.	H.G.	S.X.	Please select
0.20	22.4	1619760_at	At3g07560	-	-	3e-5	At1g61255	-	O.I.	H.G.	S.X.	Please select
0.18	19.4	1610567_at	At3g07560	-	-	3e-5	At3g48185	unknown protein	O.I.	H.G.	S.X.	Please select
0.16	16.7	1609590_s_at	At3g07560	hypothetical protein LOC100253669	-	3e-25	At2g34510	-	O.I.	H.G.	S.X.	Please select
0.15	15.6	1606707_at	At3g07560	hypothetical protein LOC100248187	-	2e-2	At2g41630	TFIIB (TRANSCRIPTION FACTOR II B)	O.I.	H.G.	S.X.	Please select
0.15	15.6	1608586_at	At3g07560	hypothetical protein LOC100241814	-	4e-18	At4g21960	PRXR1	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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