CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.10077.1.A1_at

Gene name glycine-rich protein
Homology with Arabidopsis Similar to At3g07560: PEX13 (PEROXIN 13) (HF=7e-1)

Module size 7 genes

NF 0.41

%ile 46.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 0.97 Zm.10077.1.A1_at CA399756 glycine-rich protein - 7e-1 At3g07560 PEX13 (PEROXIN 13) O.I. H.G. S.X.
0.43 52.8 0.97 Zm.12958.1.A1_at CA402421 hypothetical protein LOC100217276 - 9e+0 At5g43245 unknown protein O.I. H.G. S.X.
0.40 48.5 0.98 Zm.19146.1.A1_at CO533664 hypothetical protein LOC100193961 - 5e-1 At3g09050 unknown protein O.I. H.G. S.X.
0.38 44.2 0.97 Zm.13026.1.A1_a_at AY111398.1 - - 3e-1 At4g28930 unknown protein O.I. H.G. S.X.
0.30 29.8 0.97 Zm.9852.1.A1_at BM381073 syntaxin 121 - 5e-3 At5g63740 zinc finger protein-related O.I. H.G. S.X.
0.30 29.8 0.97 Zm.36.2.S1_a_at AF461049.1 delta zein structural10 - 9e-2 At2g45110 ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4) O.I. H.G. S.X.
0.29 28.1 0.98 Zm.19335.1.A1_at CO521700 hypothetical protein LOC100279445 - 6e-4 At3g22440 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.6 97.9 GSM385709 Deep-sowing 10d treatment TIBA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
5.2 96.9 GSM385710 Deep-sowing 10d treatment TIBA, biological rep2 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
4.6 96.4 GSM253278 ZM_8d_SG200_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
3.7 95.4 GSM253265 ZM_4d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.6 95.2 GSM253279 ZM_8d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.6 95.2 GSM253267 ZM_4d_SG200_3inf_III GSE10023 Maize gene expression during infection with Ustilago maydis
3.4 94.9 GSM253277 ZM_8d_SG200_3inf_I GSE10023 Maize gene expression during infection with Ustilago maydis
3.3 94.7 GSM323172 Zm_SG200Dpep1_24hpi_III GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1
3.0 94.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.9 93.8 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the barley gene, Contig12876_at, orthologous to the query gene, Zm.10077.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.38 49.5 Contig12876_at At3g07560 - - 3e+0 At5g48710 ubiquitin-related O.I. H.G. S.X.
0.36 47.1 Contig10662_at At3g07560 - - 2e-1 At5g52660 myb family transcription factor O.I. H.G. S.X.
0.32 40.3 Contig13544_at At3g07560 - - 5e-2 At1g19300 PARVUS (PARVUS) O.I. H.G. S.X.
0.24 27.2 Contig930_at At3g07560 - - 8e-35 At5g19770 TUA3 O.I. H.G. S.X.
0.22 24.2 Contig6120_at At3g07560 - - 3e-6 At3g01450 binding O.I. H.G. S.X.
0.13 11.6 Contig16555_at At3g07560 - - 6e-3 At3g12685 - O.I. H.G. S.X.
0.10 8.4 Contig12099_at At3g07560 - - 7e+0 At5g48480 unknown protein O.I. H.G. S.X.
0.07 5.8 Contig8041_at At3g07560 - - 9e-2 At4g28480 DNAJ heat shock family protein O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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