Co-expression analysis

Gene ID Zm.10077.1.A1_at
Gene name glycine-rich protein
Homology with ArabidopsisSimilar to At3g07560: PEX13 (PEROXIN 13) (HF=7e-1)
Module size 7 genes
NF 0.41
%ile 46.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.97Zm.10077.1.A1_atCA399756glycine-rich protein-7e-1At3g07560PEX13 (PEROXIN 13)O.I.H.G.S.X.
0.4352.80.97Zm.12958.1.A1_atCA402421hypothetical protein LOC100217276-9e+0At5g43245unknown proteinO.I.H.G.S.X.
0.4048.50.98Zm.19146.1.A1_atCO533664hypothetical protein LOC100193961-5e-1At3g09050unknown proteinO.I.H.G.S.X.
0.3844.20.97Zm.13026.1.A1_a_atAY111398.1--3e-1At4g28930unknown proteinO.I.H.G.S.X.
0.3029.80.97Zm.9852.1.A1_atBM381073syntaxin 121-5e-3At5g63740zinc finger protein-relatedO.I.H.G.S.X.
0.3029.80.97Zm.36.2.S1_a_atAF461049.1delta zein structural10-9e-2At2g45110ATEXPB4 (ARABIDOPSIS THALIANA EXPANSIN B4)O.I.H.G.S.X.
0.2928.10.98Zm.19335.1.A1_atCO521700hypothetical protein LOC100279445-6e-4At3g22440hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
7.697.9GSM385709Deep-sowing 10d treatment TIBA, biological rep1GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO
5.296.9GSM385710Deep-sowing 10d treatment TIBA, biological rep2GSE15371Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowingLink to GEO
4.696.4GSM253278ZM_8d_SG200_3inf_IIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.795.4GSM253265ZM_4d_SG200_3inf_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.695.2GSM253279ZM_8d_SG200_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.695.2GSM253267ZM_4d_SG200_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.494.9GSM253277ZM_8d_SG200_3inf_IGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.394.7GSM323172Zm_SG200Dpep1_24hpi_IIIGSE12892Maize gene expression during infection with Ustilago maydis strain SG200Dpep1Link to GEO
3.094.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g07560, orthologous to the query gene, Zm.10077.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
0.1912.7At3g07560819945PEX13 (PEROXIN 13)Encodes peroxin 13 (PEX13) involved in protein transport into peroxisomes.O.I.H.G.S.X.
0.5065.3At4g32150829347ATVAMP711 (ARABIDOPSIS THALIANA VESICLE-ASSOCIATED MEMBRANE PROTEIN 711)AtVAMP711 is a member of Synaptobrevin-like AtVAMP7C, v-SNARE (soluble N-ethyl-maleimide sensitive factor attachment protein receptors) protein family. SNAREs have been divided into four subgroups: Qa-, Qb-, Qc- and R-SNAREs. R-SNAREs are classified into three groups, the Sec22-, YKT6- and VAMP7-like R-SNAREs. One R-SNARE and three Q-SNAREs (one of each subgroup) form the trans-SNARE complex, which governs specific membrane fusions. VAMP7 proteins consist of three distinct domain, the N-terminal longin-domain (LD), the SNARE motif (SNM) and a transmembrane domain. In spite of the high similarities among the VAMP7 proteins, they show different subcellular localizations. VAMP7C is vacuolar-localized and its LD is essential for the correct localization. Generally, it is suggested that the complete LD is the determinant of subcellular sorting in both animal and plant R-SNAREs.O.I.H.G.S.X.
0.4050.8At4g03030828110kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBVFO.I.H.G.S.X.
0.3338.1At4g17170827428RABB1C (ARABIDOPSIS RAB GTPASE HOMOLOG B1C)member of RAB gene familyO.I.H.G.S.X.
0.2014.4At4g31080829235unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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