Co-expression analysis

Gene ID Zm.10073.1.A1_at
Gene name protein AATF
Homology with ArabidopsisSimilar to At1g75460: ATP-dependent protease La (LON) domain-containing protein (HF=1e+0)
Module size 6 genes
NF 0.46
%ile 55.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7792.10.97Zm.10073.1.A1_atBM378953protein AATF-1e+0At1g75460ATP-dependent protease La (LON) domain-containing proteinO.I.H.G.S.X.
0.6077.80.97Zm.5990.1.S1_a_atAY111300.1--2e-6At5g49980AFB5 (Auxin F-Box protein 5)O.I.H.G.S.X.
0.4455.70.98Zm.3903.1.S1_atAW438311--1e+0At5g02110CYCD7O.I.H.G.S.X.
0.4048.50.97Zm.8972.1.S1_atCD435957hypothetical protein LOC100217237-7e-17At3g54320WRI1 (WRINKLED 1)O.I.H.G.S.X.
0.3538.90.98Zm.16705.1.S1_atBM501579--3e-1At1g16430surfeit locus protein 5 family protein / SURF5 family proteinO.I.H.G.S.X.
0.2928.10.97Zm.5976.2.S1_atBG265782--3e+0At5g4008060S ribosomal protein-relatedO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6785.80.96Zm.10076.1.S1_atBM379471DAG protein-9e-15At1g32580plastid developmental protein DAG, putativeO.I.H.G.S.X.
0.4048.50.98Zm.520.1.S1_x_atAF200528.1cellulose synthase-4-2e-74At5g05170CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)O.I.H.G.S.X.
0.3742.30.95Zm.5135.1.A1_atAI600980Dual-specificity protein-like phosphatase 3-2e-5At3g10940protein phosphatase-relatedO.I.H.G.S.X.
0.3641.30.97Zm.2630.1.A1_atAW066591--3e+0At5g48545histidine triad family protein / HIT family proteinO.I.H.G.S.X.
0.3641.30.97Zm.5010.1.A1_atAI600391hypothetical protein LOC100193747-2e-1At1g48920ATNUC-L1O.I.H.G.S.X.
0.3336.00.97Zm.2181.1.S1_atBF727788--9e-1At2g10602unknown proteinO.I.H.G.S.X.
0.3131.60.95Zm.3927.1.A1_atBM350041hypothetical protein LOC100193737-1e-8At2g26670TED4 (REVERSAL OF THE DET PHENOTYPE 4)O.I.H.G.S.X.
0.3131.60.96Zm.18435.1.A1_atCO529704hypothetical protein LOC100272554-4e-7At5g39830DEG8O.I.H.G.S.X.
0.2928.10.96Zm.13832.1.A1_atAI665313hypothetical protein LOC100194404-3e-9At5g57330aldose 1-epimerase family proteinO.I.H.G.S.X.
0.2928.10.97Zm.6297.1.A1_atAI691305--1e+1At5g61412unknown proteinO.I.H.G.S.X.
0.2928.10.98Zm.12992.1.A1_atCA402979--2e+0At3g17365catalytic/ methyltransferaseO.I.H.G.S.X.
0.2724.60.96Zm.15710.1.A1_atCD441114hypothetical protein LOC100194046-4e-2At5g62650unknown proteinO.I.H.G.S.X.
0.2521.30.98Zm.17740.2.A1_a_atBI430966hypothetical protein LOC100277215-2e+0At1g77200AP2 domain-containing transcription factor TINY, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.698.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.698.4GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.398.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.098.2GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320470protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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