Co-expression analysis

Gene ID	Zm.10073.1.A1_at
Gene name	protein AATF
Homology with Arabidopsis	Similar to At1g75460: ATP-dependent protease La (LON) domain-containing protein (HF=1e+0)
Module size	6 genes
NF	0.46
%ile	55.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.97	Zm.10073.1.A1_at	BM378953	protein AATF	-	1e+0	At1g75460	ATP-dependent protease La (LON) domain-containing protein	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.5990.1.S1_a_at	AY111300.1	-	-	2e-6	At5g49980	AFB5 (Auxin F-Box protein 5)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.3903.1.S1_at	AW438311	-	-	1e+0	At5g02110	CYCD7	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.8972.1.S1_at	CD435957	hypothetical protein LOC100217237	-	7e-17	At3g54320	WRI1 (WRINKLED 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.16705.1.S1_at	BM501579	-	-	3e-1	At1g16430	surfeit locus protein 5 family protein / SURF5 family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.5976.2.S1_at	BG265782	-	-	3e+0	At5g40080	60S ribosomal protein-related	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1621438_x_at, orthologous to the query gene, Zm.10073.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.8	1621438_x_at	At1g75460	-	-	2e+0	At4g23770	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	13.3	1622265_at	At1g75460	hypothetical protein LOC100242865	-	3e-1	At5g15980	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.	Please select
0.10	10.3	1608167_s_at	At1g75460	hypothetical protein LOC100252467	-	4e-34	At5g56670	40S ribosomal protein S30 (RPS30C)	O.I.	H.G.	S.X.	Please select
0.04	5.2	1612169_at	At1g75460	hypothetical protein LOC100243098	-	2e-16	At3g12390	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	O.I.	H.G.	S.X.	Please select
0.04	5.2	1616651_at	At1g75460	hypothetical protein LOC100263083	-	1e-12	At1g09270	IMPA-4 (IMPORTIN ALPHA ISOFORM 4)	O.I.	H.G.	S.X.	Please select
0.02	3.2	1621288_at	At1g75460	hypothetical protein LOC100252015	-	2e+0	At5g50030	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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