Co-expression analysis

Gene ID Zm.10063.1.A1_at
Gene name homeobox protein HD1
Homology with ArabidopsisSimilar to At4g32040: KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5) (HF=1e-12)
Module size 6 genes
NF 0.53
%ile 69.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.99Zm.10063.1.A1_atBM378869homeobox protein HD1-1e-12At4g32040KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5)O.I.H.G.S.X.
0.5571.60.99Zm.4239.1.A1_atBM080569hypothetical protein LOC100193561-2e+0At5g04820OFP13 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13)O.I.H.G.S.X.
0.4759.90.99Zm.2234.1.S1_a_atCO526542hypothetical protein LOC100276749 /// hypothetical protein LOC100276758-2e+1At5g53486unknown proteinO.I.H.G.S.X.
0.4455.70.99Zm.3699.7.S1_a_atCK371636ribosomal proteinS6-1e-60At4g31700RPS6 (RIBOSOMAL PROTEIN S6)O.I.H.G.S.X.
0.3844.20.99Zm.4308.1.A1_atAY112093.1--1e-1At1g08390nucleic acid bindingO.I.H.G.S.X.
0.3641.30.99Zm.7060.1.A1_atCO530085--4e-1At3g10500anac053 (Arabidopsis NAC domain containing protein 53)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.698.8GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.998.6GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.698.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.098.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage